RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 SVIPQ8NHG7 77 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 TRGV9Q99603 122 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 CGB3P0DN86 165 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 PFN2P35080 140 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 IGKV1-27A0A075B6S5 117 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 COL4A5P29400 1685 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 TMEM200BQ69YZ2 307 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 CLPSL2Q6UWE3 100 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 F5H768 121 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 ZC2HC1AQ96GY0 325 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 CSRP2Q16527 193 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 RASL11AQ6T310 242 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 KLK9Q9UKQ9 250 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 IGKV3D-7A0A0C4DH55 119 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 LINC00271P0C7V0 271 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 EIF4EBP2Q13542 120 aaPredicted RBP6.43□□□□□ -1.38
CIITA-201ENST00000324288 GATA4P43694 442 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 TMEM258P61165 79 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 DAD1P61803 113 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 SPSB3Q6PJ21 355 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 C15orf62A8K5M9 175 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 TCTEX1D4Q5JR98 221 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 RUSC1-AS1Q66K80 236 aa6.43□□□□□ -1.38
CIITA-201ENST00000324288 SYNJ2BPP57105 145 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 RNASE13Q5GAN3 156 aaKnown RBP6.42□□□□□ -1.38
CIITA-201ENST00000324288 TMEM242Q9NWH2 141 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 IGHG3P01860 377 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 VWC2Q2TAL6 325 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 TMEM105Q8N8V8 129 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 A0A1W2PPM0 123 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 CGB7P0DN87 165 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 GNLYP22749 145 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 FAM90A1Q86YD7 464 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 ANKRD29Q8N6D5 301 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 NCOR1P1Q9H4R4 102 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 IGHV3-38A0A0C4DH36 116 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 Q86TA4 180 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 ZNRD1Q9P1U0 126 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 NUP210Q8TEM1 1887 aaPredicted RBP6.42□□□□□ -1.38
CIITA-201ENST00000324288 J3QW42 95 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 FGF6P10767 208 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 IL17RELQ6ZVW7 336 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 ZNF672Q499Z4 452 aaPredicted RBP6.42□□□□□ -1.38
CIITA-201ENST00000324288 DNAJC30Q96LL9 226 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 CLPSP04118 112 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 HLA-DRB4P13762 266 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 C18orf32Q8TCD1 76 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 HLA-DRB4X5D2U9 266 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 SIGLEC8Q9NYZ4 499 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 IGHV1-3A0A0C4DH29 117 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 NXPH4O95158 308 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 NBL1P41271 181 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 CEP192Q8TEP8 1941 aa6.42□□□□□ -1.38
CIITA-201ENST00000324288 NDUFS5O43920 106 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 RPL36AP83881 106 aaKnown RBP6.41□□□□□ -1.38
CIITA-201ENST00000324288 MRPL51Q4U2R6 128 aaKnown RBP6.41□□□□□ -1.38
CIITA-201ENST00000324288 RPL36ALQ969Q0 106 aaKnown RBP6.41□□□□□ -1.38
CIITA-201ENST00000324288 C1QTNF4Q9BXJ3 329 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 K7EMI3 77 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 NRXN2Q9P2S2 1712 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 H3BMG7 143 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 CEACAM8P31997 349 aaPredicted RBP6.41□□□□□ -1.38
CIITA-201ENST00000324288 CEND1Q8N111 149 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 MRPL27Q9P0M9 148 aaKnown RBP6.41□□□□□ -1.38
CIITA-201ENST00000324288 A0A096LPF7 62 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 J3QRE1 110 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 SHISA9B4DS77 424 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 IGLL1P15814 213 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 LY6G5BQ8NDX9 201 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 SH2D6Q7Z4S9 175 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 THAP8Q8NA92 274 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 TRAV12-2A0A075B6T6 113 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 IGHV1-8P0DP01 117 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 DEFB105AQ8NG35 78 aa6.41□□□□□ -1.38
CIITA-201ENST00000324288 Q6ZRM9 215 aa6.4□□□□□ -1.38
CIITA-201ENST00000324288 XCL2Q9UBD3 114 aa6.4□□□□□ -1.38
CIITA-201ENST00000324288 TMEM14EPQ6UXP3 125 aa6.4□□□□□ -1.38
CIITA-201ENST00000324288 PLXNA4Q9HCM2 1894 aa6.4□□□□□ -1.38
CIITA-201ENST00000324288 SLAQ13239 276 aa6.4□□□□□ -1.38
CIITA-201ENST00000324288 CYYR1Q96J86 154 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 PFN1P07737 140 aaKnown RBP6.4□□□□□ -1.39
CIITA-201ENST00000324288 LIME1Q9H400 295 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 IGLC2P0DOY2 106 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 IGLC3P0DOY3 106 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 SS18Q15532 418 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 CARD19Q96LW7 228 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 FAM90A9PA6NNJ1 464 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 UNQ6494/PRO21346Q6UXR6 183 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 LINC00114Q6XXX2 140 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 CD177Q8N6Q3 437 aa6.4□□□□□ -1.39
CIITA-201ENST00000324288 IGHV4-4A0A075B6R2 117 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 Q6P435 159 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 NKAPP1Q8N9T2 125 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 NTN5Q8WTR8 489 aaPredicted RBP6.39□□□□□ -1.39
CIITA-201ENST00000324288 TP53TG1Q9Y2A0 90 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 COX8AP10176 69 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 FBLN5Q9UBX5 448 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 CRLF1O75462 422 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 LINC01559Q495D7 138 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 EFNA4P52798 201 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms