RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LTBP2Q14767 1821 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 MINOS1Q5TGZ0 78 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 MINOS1-NBL1R4GNA1 71 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 K7EN84 100 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 FCN3O75636 299 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 WNT2P09544 360 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 PMVKQ15126 192 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 TDRG1Q3Y452 100 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 VMO1Q7Z5L0 202 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 ZNF747Q9BV97 191 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 SPANXCQ9NY87 97 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 SAP30O75446 220 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 UTF1Q5T230 341 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 PRADC1Q9BSG0 188 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 LAMTOR3Q9UHA4 124 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 CREBBPQ92793 2442 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 NUPR1O60356 82 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 KLRD1Q13241 179 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 IGFL4Q6B9Z1 124 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 LYPD2Q6UXB3 125 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 TMEM141Q96I45 108 aa9.24□□□□□ -0.93
VPS39-201ENST00000318006 KIF26AQ9ULI4 1882 aaPredicted RBP9.24□□□□□ -0.93
VPS39-201ENST00000318006 PCNX2A6NKB5 2137 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 ZNF503-AS2A6NEH8 195 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 E7EQL1 145 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 F8VRH5 84 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 K7ENP7 123 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 TRACP01848 142 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 WFDC12Q8WWY7 111 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 ZNF625Q96I27 306 aaPredicted RBP9.23□□□□□ -0.93
VPS39-201ENST00000318006 PRSS22Q9GZN4 317 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 JPT2Q9H910 190 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 TP53TG1Q9Y2A0 90 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 A0A1W2PPI3 338 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 VWC2LB2RUY7 222 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 BUB1B-PAK6H3BSN5 160 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 M0R1W7 72 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 HLA-DRB4P13762 266 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 Q6ZR03 302 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 PRIMA1Q86XR5 153 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 SRSF8Q9BRL6 282 aaKnown RBP9.23□□□□□ -0.93
VPS39-201ENST00000318006 HLA-DRB4X5D2U9 266 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 DENND4CQ5VZ89 1909 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 KIAA1671Q9BY89 1806 aa9.23□□□□□ -0.93
VPS39-201ENST00000318006 TRBV19A0A075B6N1 114 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 PF4P02776 101 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 SRD5A1P18405 259 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 GNLYP22749 145 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 COL8A2P25067 703 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 PEMTQ9UBM1 199 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 C5orf64Q2M2E5 130 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 SOCS3O14543 225 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 NDUFS7O75251 213 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 NPYP01303 97 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 HLA-DMBP28068 263 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 C3orf36Q3SXR2 165 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 C15orf53Q8NAA6 179 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 C8orf49Q96NF6 230 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 CHCHD5Q9BSY4 110 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 PLA2G2EQ9NZK7 142 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 C2orf16Q68DN1 1984 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 PLXNB3Q9ULL4 1909 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 TRAV41A0A0B4J266 112 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 IGLV3-1P01715 115 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 GATA4P43694 442 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 NDUFA4L2Q9NRX3 87 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 ABCA1O95477 2261 aa9.22□□□□□ -0.93
VPS39-201ENST00000318006 ERCC8Q13216 396 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 PRR30Q53SZ7 412 aaPredicted RBP9.21□□□□□ -0.93
VPS39-201ENST00000318006 MORN5Q5VZ52 161 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 DKK2Q9UBU2 259 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 LINC00527Q9UJ94 153 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 ZFHX2Q9C0A1 2572 aaPredicted RBP9.21□□□□□ -0.93
VPS39-201ENST00000318006 DSCR9P59020 149 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 WDR86Q86TI4 376 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 BOD1L2Q8IYS8 172 aa9.21□□□□□ -0.93
VPS39-201ENST00000318006 LY6HO94772 140 aa9.21□□□□□ -0.94
VPS39-201ENST00000318006 TRGV4A0A0C4DH28 118 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 NTN5Q8WTR8 489 aaPredicted RBP9.2□□□□□ -0.94
VPS39-201ENST00000318006 A0A087WWL8 130 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 RPL36AP83881 106 aaKnown RBP9.2□□□□□ -0.94
VPS39-201ENST00000318006 STHQ8IWL8 128 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 RPL36ALQ969Q0 106 aaKnown RBP9.2□□□□□ -0.94
VPS39-201ENST00000318006 BDP1A6H8Y1 2624 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 IGHV3-73A0A0B4J1V6 119 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PRR20EP86478 221 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PRR20CP86479 221 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PRR20DP86480 221 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PRR20BP86481 221 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PRR20AP86496 221 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 SH2D6Q7Z4S9 175 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 SMIM20Q8N5G0 67 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 Q8TCH9 128 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 TRBV7-1A0A0A6YYK4 115 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PIP4P1Q86T03 277 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 TMEM219Q86XT9 240 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 PCP2Q8IVA1 136 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 RNF138Q8WVD3 245 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 TMEM14CQ9P0S9 112 aa9.2□□□□□ -0.94
VPS39-201ENST00000318006 IGLV1-44P01699 117 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms