RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C5orf38Q86SI9 138 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 SND1-IT1Q9HBX3 110 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 XAGE1AQ9HD64 81 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 TRBV5-7A0A0A0MS05 114 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 KLHDC9Q8NEP7 349 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 C9JQL5 133 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 GATA4P43694 442 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 XCL2Q9UBD3 114 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 UBE2D4Q9Y2X8 147 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 C17orf98A8MV24 154 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 NDUFS7O75251 213 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 LINC00269Q8N2A0 174 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 TMEM75Q8N9X5 138 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 UCN2Q96RP3 112 aa6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 DDX60LQ5H9U9 1706 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV1D-12P01611 117 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 HGFACQ04756 655 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 C15orf32Q32M92 178 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 NDUFA4O00483 81 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 EFNA4P52798 201 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 CCL4L1Q8NHW4 92 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 IGHV2-5P01817 119 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 MIFP14174 115 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 LOXP28300 417 aaPredicted RBP6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 TMEM52Q8NDY8 209 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 MRPL27Q9P0M9 148 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 CXCL6P80162 114 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 C7orf69Q9H7B7 122 aa6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 MRPL36Q9P0J6 103 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 ZFC3H1O60293 1989 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 COA6Q5JTJ3 125 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-201ENST00000313860 TMEM14DPA8MWL7 114 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 H0YGX0 51 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 K7EMT4 169 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGHV3-30P01768 117 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGHV3-33P01772 117 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGHV3-30-3P0DP02 117 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGHV3-30-5P0DP03 117 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 LINC00643Q86TS7 51 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 P0DMU3 169 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 FAM231AP0DMU4 169 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 FAM231CP0DMU5 169 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 MYO7AQ13402 2215 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV2-29A2NJV5 120 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 RBAKDNA6NC62 111 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 H3BS24 57 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 RBX1P62877 108 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 CCL26Q9Y258 94 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 NDUFC1O43677 76 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 WDR86Q86TI4 376 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 IMUPQ9GZP8 106 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 C3orf84H3BNL1 204 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 ARMS2P0C7Q2 107 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 Q8N8P6 123 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 COL4A1P02462 1669 aa6.12□□□□□ -1.43
LIMCH1-201ENST00000313860 MPZP25189 248 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 FAM19A3Q7Z5A8 133 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 AGPAT4-IT1Q9H0P7 198 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 DOT1LQ8TEK3 1739 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 CLLU1OSQ5K130 101 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 CSNK1G2-AS1Q8NCQ2 148 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 REG3AQ06141 175 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 LINC01545Q5VT33 79 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 MRPL14Q6P1L8 145 aaKnown RBP6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 DIRC1Q969H9 104 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 HIGD2AQ9BW72 106 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 C2CD4DB7Z1M9 353 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 DEFB124Q8NES8 71 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 WFDC5Q8TCV5 224 aa6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 ZNF837Q96EG3 531 aaPredicted RBP6.11□□□□□ -1.43
LIMCH1-201ENST00000313860 Q8N976 141 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 NAV1Q8NEY1 1877 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 SDHAF1A6NFY7 115 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 C4orf51C9J302 202 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 PCOTHQ58A44 107 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 FAM201AQ5SY85 155 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 GFI1Q99684 422 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 FGF22Q9HCT0 170 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 TRBV6-7A0A0A0MS04 114 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 C5orf64Q2M2E5 130 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 KIR2DL5BQ8NHK3 375 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV1-27A0A075B6S5 117 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 H3BQ85 93 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 ACYP2P14621 99 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 FAM19A5Q7Z5A7 132 aaPredicted RBP6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 SLX4Q8IY92 1834 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 KNTC1P50748 2209 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 A0A1W2PQD3 144 aa6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 MRPS36P82909 103 aaKnown RBP6.1□□□□□ -1.43
LIMCH1-201ENST00000313860 DOCK9Q9BZ29 2069 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV1-6A0A0C4DH72 117 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 C15orf62A8K5M9 175 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 CSRP3P50461 194 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 SPTY2D1-AS1A0A0U1RR47 76 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 SPAARA0A1B0GVQ0 90 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 SBF2Q86WG5 1849 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 IGKV1D-13A0A0B4J2D9 117 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 C8orf87E5RJ46 101 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms