RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 Q6ZRM9 215 aa6.6□□□□□ -1.35
VPS41-202ENST00000310301 RPL36ALQ969Q0 106 aaKnown RBP6.6□□□□□ -1.35
VPS41-202ENST00000310301 TP53TG1Q9Y2A0 90 aa6.6□□□□□ -1.35
VPS41-202ENST00000310301 E9PQ18 207 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 LINC00205P59089 165 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 C15orf32Q32M92 178 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 ZCCHC24Q8N2G6 241 aaKnown RBP6.59□□□□□ -1.35
VPS41-202ENST00000310301 IGLC7A0M8Q6 106 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 EFNA2O43921 213 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 PSPNO60542 156 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 RBM3P98179 157 aaKnown RBP6.59□□□□□ -1.35
VPS41-202ENST00000310301 NDPQ00604 133 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 MLANAQ16655 118 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 LGALS9BQ3B8N2 356 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 LGALS9CQ6DKI2 356 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 CARD19Q96LW7 228 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 VGLL1Q99990 258 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 LINC00527Q9UJ94 153 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 LINC00477Q96M19 166 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 ZNF492Q9P255 531 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 PRO1854Q9UHT4 67 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 ETV2O00321 342 aaPredicted RBP6.59□□□□□ -1.35
VPS41-202ENST00000310301 IGHV3-53P01767 116 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 TMEM258P61165 79 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 Q71RC1 249 aaPredicted RBP6.59□□□□□ -1.35
VPS41-202ENST00000310301 Q8N8P6 123 aa6.59□□□□□ -1.35
VPS41-202ENST00000310301 KIF26AQ9ULI4 1882 aaPredicted RBP6.59□□□□□ -1.36
VPS41-202ENST00000310301 RPL32P62910 135 aaKnown RBP6.58□□□□□ -1.36
VPS41-202ENST00000310301 FAM104BQ5XKR9 115 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 C8orf49Q96NF6 230 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 TP53BP1Q12888 1972 aaPredicted RBP6.58□□□□□ -1.36
VPS41-202ENST00000310301 C5orf63A6NC05 138 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 CRYBA4P53673 196 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 VWC2Q2TAL6 325 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 V9GYV3 84 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 TRAV12-1A0A0B4J245 112 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 DTX2Q86UW9 622 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 A0A087WX48 190 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 SMIM27A0A1W2PRY6 76 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 PRSS46E5RG02 174 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 ZNF726P1Q15940 193 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 C2orf66Q6UXQ4 117 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 MPDZO75970 2070 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 TRGV1A0A0A0MS02 117 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 RS1O15537 224 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 CD177Q8N6Q3 437 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 TMEM141Q96I45 108 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 SPANXCQ9NY87 97 aa6.58□□□□□ -1.36
VPS41-202ENST00000310301 WIPF3A6NGB9 483 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 C12orf74Q32Q52 190 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 C9orf139Q6ZV77 190 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 NTN5Q8WTR8 489 aaPredicted RBP6.57□□□□□ -1.36
VPS41-202ENST00000310301 TRAV41A0A0B4J266 112 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 RNASE2P10153 161 aaKnown RBP6.57□□□□□ -1.36
VPS41-202ENST00000310301 CMC4P56277 68 aaPredicted RBP6.57□□□□□ -1.36
VPS41-202ENST00000310301 TAL2Q16559 108 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 MRPL51Q4U2R6 128 aaKnown RBP6.57□□□□□ -1.36
VPS41-202ENST00000310301 TMEM200BQ69YZ2 307 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 TMEM75Q8N9X5 138 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 PROK2Q9HC23 129 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 IGHV1-3A0A0C4DH29 117 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 H0YJW9 148 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 PNRC2Q9NPJ4 139 aaKnown RBP6.57□□□□□ -1.36
VPS41-202ENST00000310301 CACNA1DQ01668 2161 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 FNDC10F2Z333 226 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 SIVA1O15304 175 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 TCTEX1D4Q5JR98 221 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 FANCMQ8IYD8 2048 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 TRBV6-6A0A0A6YYG2 114 aa6.57□□□□□ -1.36
VPS41-202ENST00000310301 NSUN5P1Q3KNT7 163 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 TRPT1Q86TN4 253 aaKnown RBP6.56□□□□□ -1.36
VPS41-202ENST00000310301 SAP30O75446 220 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 SIGLEC8Q9NYZ4 499 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 MRPL35Q9NZE8 188 aaKnown RBP6.56□□□□□ -1.36
VPS41-202ENST00000310301 HLA-DRB4P13762 266 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 HLA-DMBP28068 263 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 SYNJ2BPP57105 145 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 Q6P435 159 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 HLA-DRB4X5D2U9 266 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 TRAV26-2A0A0B4J265 109 aa6.56□□□□□ -1.36
VPS41-202ENST00000310301 RNASE8Q8TDE3 154 aaKnown RBP6.56□□□□□ -1.36
VPS41-202ENST00000310301 IGHV2-70DA0A0C4DH43 119 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 TINCRA0A1B0GVN0 87 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 SRRM5B3KS81 715 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 IGHV1-8P0DP01 117 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 DEFB121Q5J5C9 76 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 IL17RELQ6ZVW7 336 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 TEX48A0A1B0GUV7 120 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 IGHG4P01861 327 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 COL8A2P25067 703 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 SH2D6Q7Z4S9 175 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 KIR2DL5BA0A0G2JN68 375 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 KIR2DL5BA0A0G2JPC4 375 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 FOXG1P55316 489 aaPredicted RBP6.55□□□□□ -1.36
VPS41-202ENST00000310301 Q6ZS49 121 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 VMO1Q7Z5L0 202 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 KIR2DL5AQ8N109 375 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 SHANK2-AS3Q9BTD1 123 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 SS18Q15532 418 aa6.55□□□□□ -1.36
VPS41-202ENST00000310301 VOPP1Q96AW1 172 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms