RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 AJUBAQ96IF1 538 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 GYPEP15421 78 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 TMEM170AQ8WVE7 144 aa6.16□□□□□ -1.42
SCN9A-201ENST00000303354 ATXN8Q156A1 80 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 NMSQ5H8A3 153 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 IGHV2-70P01814 119 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 TRIOBPQ9H2D6 2365 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 NDUFA4O00483 81 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 IGLL1P15814 213 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 CCL18P55774 89 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 MORN5Q5VZ52 161 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 RNF138Q8WVD3 245 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 CFHR4Q92496 578 aa6.15□□□□□ -1.42
SCN9A-201ENST00000303354 ADAMTSL5Q6ZMM2 481 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 I3L3M4 83 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 CD5P06127 495 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 FGF16O43320 207 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 CRYGCP07315 174 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 WT1-ASQ06250 92 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 NDUFA4L2Q9NRX3 87 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 ANK1P16157 1881 aa6.15□□□□□ -1.43
SCN9A-201ENST00000303354 YLPM1P49750 1951 aaKnown RBP6.15□□□□□ -1.43
SCN9A-201ENST00000303354 A0A1B0GW64 132 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 C2orf82Q6UX34 121 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 CYTL1Q9NRR1 136 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 SAMD5Q5TGI4 173 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 COL4A3Q01955 1670 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 ZNF479Q96JC4 524 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 GNB1LQ9BYB4 327 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 LY6G5BQ8NDX9 201 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 GTSF1Q8WW33 167 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 CABIN1Q9Y6J0 2220 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 MYMXA0A1B0GTQ4 84 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 CLPSL1A2RUU4 121 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 FAM90A2PQ658T7 463 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 LINC00482Q8N8I6 264 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 MRPL27Q9P0M9 148 aaKnown RBP6.14□□□□□ -1.43
SCN9A-201ENST00000303354 ZNF318Q5VUA4 2279 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 NCR3O14931 201 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 ZNF843Q8N446 348 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 QRFPP83859 136 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 CHAC1Q9BUX1 264 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 hADV29S1A0JD25 119 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 GATA1P15976 413 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-201ENST00000303354 SMIM2Q9BVW6 85 aa6.14□□□□□ -1.43
SCN9A-201ENST00000303354 LAMTOR2Q9Y2Q5 125 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 RALGAPA2Q2PPJ7 1873 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 TMEM238C9JI98 176 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 ZC2HC1BQ5TFG8 222 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 SLX1AQ9BQ83 275 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 GOLGB1Q14789 3259 aaKnown RBP6.13□□□□□ -1.43
SCN9A-201ENST00000303354 ZNF124Q15973 351 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 TMEM14EPQ6UXP3 125 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 LINC01551Q86U37 167 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 LHFPL1Q86WI0 220 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 PLEKHB2Q96CS7 222 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 KLF12Q9Y4X4 402 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 SDHAF1A6NFY7 115 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 DYNAPQ8N1N2 210 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 TMEM14BQ9NUH8 114 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 A0A096LNI7 61 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 TRBV12-3P01733 135 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 PPBPP02775 128 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 AMTNQ6UX39 209 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 IGKV2-24A0A0C4DH68 120 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 C10orf105Q8TEF2 133 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 FANCD2OSQ96PS1 177 aa6.13□□□□□ -1.43
SCN9A-201ENST00000303354 HAMPP81172 84 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 MBD3L1Q8WWY6 194 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 C9JAW5 83 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 PFN1P07737 140 aaKnown RBP6.12□□□□□ -1.43
SCN9A-201ENST00000303354 DNAJC9-AS1A6NH13 148 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 ELANEP08246 267 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 LYPD6BQ8NI32 183 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 ZNF503Q96F45 646 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 A8MWV9 139 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 IGLV1-44P01699 117 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 CHCHD1Q96BP2 118 aaKnown RBP6.12□□□□□ -1.43
SCN9A-201ENST00000303354 FHL1Q13642 323 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.12□□□□□ -1.43
SCN9A-201ENST00000303354 LGALS1P09382 135 aaKnown RBP6.12□□□□□ -1.43
SCN9A-201ENST00000303354 TIRAPP58753 221 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 Q8TCH9 128 aa6.12□□□□□ -1.43
SCN9A-201ENST00000303354 C15orf65H3BRN8 121 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 MRPL51Q4U2R6 128 aaKnown RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 C1orf43Q9BWL3 253 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 TRBV19A0A075B6N1 114 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 IGHV1-24A0A0C4DH33 117 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIGD2BQ4VC39 106 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 ZC2HC1AQ96GY0 325 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 CACNA1GO43497 2377 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 H3BRN7 92 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 LY6G6DO95868 133 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 RSPO1Q2MKA7 263 aaPredicted RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 C2orf66Q6UXQ4 117 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 RMI2Q96E14 147 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 RBMY1FQ15415 496 aaKnown RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 SMAD5-AS1Q9Y6J3 95 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 PLXNA4Q9HCM2 1894 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BKO60814 126 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms