RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 FLNCQ14315 2725 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 ACACBO00763 2458 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 TMEM213A2RRL7 107 aa18.39■□□□□ 0.53
TRIM54-201ENST00000296098 AVPP01185 164 aa18.39■□□□□ 0.53
TRIM54-201ENST00000296098 SPATA45Q537H7 98 aa18.39■□□□□ 0.53
TRIM54-201ENST00000296098 ZNF705AQ6ZN79 300 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-201ENST00000296098 TRBV12-3P01733 135 aa18.39■□□□□ 0.53
TRIM54-201ENST00000296098 FABP5P3A8MUU1 101 aa18.38■□□□□ 0.53
TRIM54-201ENST00000296098 IGLC6P0CF74 106 aa18.38■□□□□ 0.53
TRIM54-201ENST00000296098 CYB5R2Q6BCY4 276 aa18.38■□□□□ 0.53
TRIM54-201ENST00000296098 IL17RELQ6ZVW7 336 aa18.38■□□□□ 0.53
TRIM54-201ENST00000296098 GLMPQ8WWB7 406 aa18.38■□□□□ 0.53
TRIM54-201ENST00000296098 NDUFA4O00483 81 aa18.37■□□□□ 0.53
TRIM54-201ENST00000296098 BLCAPP62952 87 aa18.37■□□□□ 0.53
TRIM54-201ENST00000296098 ORM1P02763 201 aa18.37■□□□□ 0.53
TRIM54-201ENST00000296098 TMEM70Q9BUB7 260 aa18.37■□□□□ 0.53
TRIM54-201ENST00000296098 A0A1B0GV90 55 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 CSN3P07498 182 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 PF4V1P10720 104 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 ZNF138P52744 262 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 SSTP61278 116 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 SNHG12Q9BXW3 62 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 AGPAT4-IT1Q9H0P7 198 aa18.36■□□□□ 0.53
TRIM54-201ENST00000296098 LEPROTL1O95214 131 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 TMEM78Q5T7P6 136 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 FAM104BQ5XKR9 115 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 UNQ9165/PRO28630Q6UXU0 137 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 MUC21A0A0G2JKD1 596 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 MUC21A0A140T8X8 626 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 M0R143 59 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 COX6B1P14854 86 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 LINC01559Q495D7 138 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 MUC21Q5SSG8 566 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 ATOH7Q8N100 152 aa18.35■□□□□ 0.53
TRIM54-201ENST00000296098 IGHV3-11P01762 117 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 OR5AL1P0C617 328 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 Q6ZS46 218 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 AMN1Q8IY45 258 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 LINC01356Q8N9X3 169 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 C16orf92Q96LL3 132 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 KLK15Q9H2R5 256 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 VPS13CQ709C8 3753 aa18.34■□□□□ 0.53
TRIM54-201ENST00000296098 C9orf139Q6ZV77 190 aa18.33■□□□□ 0.53
TRIM54-201ENST00000296098 U3KQK5 164 aa18.33■□□□□ 0.53
TRIM54-201ENST00000296098 D6R8Y8 96 aa18.33■□□□□ 0.52
TRIM54-201ENST00000296098 TWIST1Q15672 202 aa18.33■□□□□ 0.52
TRIM54-201ENST00000296098 MRPL52Q86TS9 123 aaKnown RBP18.33■□□□□ 0.52
TRIM54-201ENST00000296098 ZNF575Q86XF7 245 aa18.33■□□□□ 0.52
TRIM54-201ENST00000296098 BBC3Q96PG8 261 aaPredicted RBP18.33■□□□□ 0.52
TRIM54-201ENST00000296098 PSMG3-AS1Q96PY0 264 aa18.33■□□□□ 0.52
TRIM54-201ENST00000296098 IGLV1-40P01703 118 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 AP5S1Q9NUS5 200 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 SMAD7O15105 426 aaKnown RBP18.32■□□□□ 0.52
TRIM54-201ENST00000296098 C9orf47Q6ZRZ4 202 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 LINC00173Q6ZV60 143 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 SPATA12Q7Z6I5 190 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 OR4X2Q8NGF9 303 aa18.32■□□□□ 0.52
TRIM54-201ENST00000296098 SPG11Q96JI7 2443 aa18.31■□□□□ 0.52
TRIM54-201ENST00000296098 A0A096LNT2 108 aa18.31■□□□□ 0.52
TRIM54-201ENST00000296098 CRXO43186 299 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-201ENST00000296098 HIST1H1AQ02539 215 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-201ENST00000296098 FA2HQ7L5A8 372 aa18.31■□□□□ 0.52
TRIM54-201ENST00000296098 ORMDL3Q8N138 153 aa18.31■□□□□ 0.52
TRIM54-201ENST00000296098 A0A0G2JLM5 398 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 SYS1-DBNDD2H3BUS1 97 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 CFHR3Q02985 330 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 KLHDC1Q8N7A1 406 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 PRSS3P2Q8NHM4 247 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 PRELID3AQ96N28 172 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 CNFNQ9BYD5 112 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 USP24Q9UPU5 2620 aa18.3■□□□□ 0.52
TRIM54-201ENST00000296098 MRPL51Q4U2R6 128 aaKnown RBP18.3■□□□□ 0.52
TRIM54-201ENST00000296098 TRAV9-2A0A087WT02 112 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 IGLC3P0DOY3 106 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 LCNL1Q6ZST4 164 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 NPFFR1Q9GZQ6 430 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 PPP1R14DQ9NXH3 145 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 UQCR10Q9UDW1 63 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 HSPB8Q9UJY1 196 aa18.29■□□□□ 0.52
TRIM54-201ENST00000296098 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.29■□□□□ 0.52
TRIM54-201ENST00000296098 MAJINQ3KP22 176 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 ZNF738Q8NE65 137 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 ZNF580Q9UK33 172 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 C20orf202A1L168 122 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 J3QLI3 93 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 DEFB112Q30KQ8 113 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 C20orf173Q96LM9 149 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 TMEM191AQ9H0A3 160 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 ZFHX3Q15911 3703 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 CELSR1Q9NYQ6 3014 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 MYO18BQ8IUG5 2567 aa18.28■□□□□ 0.52
TRIM54-201ENST00000296098 IGHV4-59P01825 116 aa18.27■□□□□ 0.52
TRIM54-201ENST00000296098 GPHB5Q86YW7 130 aa18.27■□□□□ 0.52
TRIM54-201ENST00000296098 ZMAT5Q9UDW3 170 aaKnown RBP18.27■□□□□ 0.52
TRIM54-201ENST00000296098 A1L4Q6 167 aa18.27■□□□□ 0.51
TRIM54-201ENST00000296098 ZNF843Q8N446 348 aa18.27■□□□□ 0.51
TRIM54-201ENST00000296098 MAP1LC3CQ9BXW4 147 aa18.27■□□□□ 0.51
TRIM54-201ENST00000296098 IGKV3D-20A0A0C4DH25 116 aa18.26■□□□□ 0.51
TRIM54-201ENST00000296098 IFI27P40305 119 aaPredicted RBP18.26■□□□□ 0.51
TRIM54-201ENST00000296098 SIGLEC8Q9NYZ4 499 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms