RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TFPI2P48307 235 aa8.83□□□□□ -1
CUX1-202ENST00000292538 ZNF80P51504 273 aaPredicted RBP8.83□□□□□ -1
CUX1-202ENST00000292538 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.83□□□□□ -1
CUX1-202ENST00000292538 GLMPQ8WWB7 406 aa8.83□□□□□ -1
CUX1-202ENST00000292538 WFDC12Q8WWY7 111 aa8.83□□□□□ -1
CUX1-202ENST00000292538 PRR25Q96S07 402 aa8.83□□□□□ -1
CUX1-202ENST00000292538 CLEC5AQ9NY25 188 aa8.83□□□□□ -1
CUX1-202ENST00000292538 NF1P21359 2839 aa8.83□□□□□ -1
CUX1-202ENST00000292538 A0A1W2PS18 150 aa8.83□□□□□ -1
CUX1-202ENST00000292538 HSBP1O75506 76 aa8.83□□□□□ -1
CUX1-202ENST00000292538 IGHG4P01861 327 aa8.83□□□□□ -1
CUX1-202ENST00000292538 RAB9AP51151 201 aa8.83□□□□□ -1
CUX1-202ENST00000292538 C8orf86Q6ZUL3 223 aa8.83□□□□□ -1
CUX1-202ENST00000292538 C18orf32Q8TCD1 76 aa8.83□□□□□ -1
CUX1-202ENST00000292538 FLNAP21333 2647 aaKnown RBP8.83□□□□□ -1
CUX1-202ENST00000292538 HECTD1Q9ULT8 2610 aa8.82□□□□□ -1
CUX1-202ENST00000292538 FAM223BA6NKX1 122 aa8.82□□□□□ -1
CUX1-202ENST00000292538 H0Y8G0 127 aa8.82□□□□□ -1
CUX1-202ENST00000292538 DEFB113Q30KQ7 82 aa8.82□□□□□ -1
CUX1-202ENST00000292538 FAM162BQ5T6X4 162 aa8.82□□□□□ -1
CUX1-202ENST00000292538 FAM223AQ8IWN6 122 aa8.82□□□□□ -1
CUX1-202ENST00000292538 SMIM12Q96EX1 92 aa8.82□□□□□ -1
CUX1-202ENST00000292538 PPP1R14DQ9NXH3 145 aa8.82□□□□□ -1
CUX1-202ENST00000292538 ZNF492Q9P255 531 aa8.82□□□□□ -1
CUX1-202ENST00000292538 ITPR2Q14571 2701 aa8.82□□□□□ -1
CUX1-202ENST00000292538 TMEM213A2RRL7 107 aa8.82□□□□□ -1
CUX1-202ENST00000292538 TSTD3H0UI37 97 aa8.82□□□□□ -1
CUX1-202ENST00000292538 S100A7P31151 101 aa8.82□□□□□ -1
CUX1-202ENST00000292538 TDRG1Q3Y452 100 aa8.82□□□□□ -1
CUX1-202ENST00000292538 LYZL1Q6UWQ5 148 aa8.82□□□□□ -1
CUX1-202ENST00000292538 Q6ZQT7 251 aa8.82□□□□□ -1
CUX1-202ENST00000292538 ZNF664Q8N3J9 261 aa8.82□□□□□ -1
CUX1-202ENST00000292538 WNK1Q9H4A3 2382 aa8.82□□□□□ -1
CUX1-202ENST00000292538 A0A1B0GUT8 65 aa8.81□□□□□ -1
CUX1-202ENST00000292538 COX19Q49B96 90 aa8.81□□□□□ -1
CUX1-202ENST00000292538 ATOH7Q8N100 152 aa8.81□□□□□ -1
CUX1-202ENST00000292538 ZNF738Q8NE65 137 aa8.81□□□□□ -1
CUX1-202ENST00000292538 BORCS7Q96B45 105 aa8.81□□□□□ -1
CUX1-202ENST00000292538 NDFIP1Q9BT67 221 aa8.81□□□□□ -1
CUX1-202ENST00000292538 NAGKQ9UJ70 344 aa8.81□□□□□ -1
CUX1-202ENST00000292538 RNF114Q9Y508 228 aa8.81□□□□□ -1
CUX1-202ENST00000292538 ITPR3Q14573 2671 aa8.81□□□□□ -1
CUX1-202ENST00000292538 M0QZK8 103 aa8.81□□□□□ -1
CUX1-202ENST00000292538 HOXA3O43365 443 aaPredicted RBP8.81□□□□□ -1
CUX1-202ENST00000292538 IGF1P05019 195 aa8.81□□□□□ -1
CUX1-202ENST00000292538 Q0VG73 95 aa8.81□□□□□ -1
CUX1-202ENST00000292538 NRN1Q9NPD7 142 aa8.81□□□□□ -1
CUX1-202ENST00000292538 LOC389332A0A1B0GUA5 103 aa8.81□□□□□ -1
CUX1-202ENST00000292538 A8MWP6 167 aa8.81□□□□□ -1
CUX1-202ENST00000292538 GPX1P07203 203 aa8.81□□□□□ -1
CUX1-202ENST00000292538 IGHV4-31P0DP07 118 aa8.81□□□□□ -1
CUX1-202ENST00000292538 TWIST1Q15672 202 aa8.81□□□□□ -1
CUX1-202ENST00000292538 KCNS1Q96KK3 526 aa8.81□□□□□ -1
CUX1-202ENST00000292538 ALKBH7Q9BT30 221 aaPredicted RBP8.81□□□□□ -1
CUX1-202ENST00000292538 PAM16Q9Y3D7 125 aa8.81□□□□□ -1
CUX1-202ENST00000292538 FASNP49327 2511 aaKnown RBP8.8□□□□□ -1
CUX1-202ENST00000292538 F6UB75 175 aa8.8□□□□□ -1
CUX1-202ENST00000292538 M0R2Z0 102 aa8.8□□□□□ -1
CUX1-202ENST00000292538 GATA3P23771 443 aa8.8□□□□□ -1
CUX1-202ENST00000292538 ZNF124Q15973 351 aa8.8□□□□□ -1
CUX1-202ENST00000292538 KHDC1LQ5JSQ8 128 aa8.8□□□□□ -1
CUX1-202ENST00000292538 SAPCD1Q5SSQ6 148 aa8.8□□□□□ -1
CUX1-202ENST00000292538 NPFFR1Q9GZQ6 430 aa8.8□□□□□ -1
CUX1-202ENST00000292538 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.8□□□□□ -1
CUX1-202ENST00000292538 A0A1B0GXF2 115 aa8.8□□□□□ -1
CUX1-202ENST00000292538 SPRY2O43597 315 aa8.8□□□□□ -1
CUX1-202ENST00000292538 PAFAH1B2P68402 229 aa8.8□□□□□ -1
CUX1-202ENST00000292538 OR10J3Q5JRS4 329 aa8.8□□□□□ -1
CUX1-202ENST00000292538 TMEM78Q5T7P6 136 aa8.8□□□□□ -1
CUX1-202ENST00000292538 NIT1Q86X76 327 aa8.8□□□□□ -1
CUX1-202ENST00000292538 AGPAT4-IT1Q9H0P7 198 aa8.8□□□□□ -1
CUX1-202ENST00000292538 ZNF324O75467 553 aaPredicted RBP8.79□□□□□ -1
CUX1-202ENST00000292538 RPLP1P05386 114 aaKnown RBP8.79□□□□□ -1
CUX1-202ENST00000292538 DEFA6Q01524 100 aa8.79□□□□□ -1
CUX1-202ENST00000292538 ATP5L2Q7Z4Y8 100 aa8.79□□□□□ -1
CUX1-202ENST00000292538 OR4B1Q8NGF8 309 aa8.79□□□□□ -1
CUX1-202ENST00000292538 NOTCH3Q9UM47 2321 aa8.79□□□□□ -1
CUX1-202ENST00000292538 NPIPB6E9PJ23 425 aa8.79□□□□□ -1
CUX1-202ENST00000292538 RIGQ13278 110 aa8.79□□□□□ -1
CUX1-202ENST00000292538 CT83Q5H943 113 aa8.79□□□□□ -1
CUX1-202ENST00000292538 WFDC11Q8NEX6 87 aa8.79□□□□□ -1
CUX1-202ENST00000292538 WIPF2Q8TF74 440 aaPredicted RBP8.79□□□□□ -1
CUX1-202ENST00000292538 RHPN1-AS1Q9BWJ2 59 aa8.79□□□□□ -1
CUX1-202ENST00000292538 TRAV8-2A0A0B4J237 113 aa8.78□□□□□ -1
CUX1-202ENST00000292538 PKIAP61925 76 aa8.78□□□□□ -1
CUX1-202ENST00000292538 C19orf54Q5BKX5 351 aa8.78□□□□□ -1
CUX1-202ENST00000292538 USMG5Q96IX5 58 aa8.78□□□□□ -1
CUX1-202ENST00000292538 MSRB1Q9NZV6 116 aa8.78□□□□□ -1
CUX1-202ENST00000292538 A0A096LNT2 108 aa8.78□□□□□ -1
CUX1-202ENST00000292538 A0A0G2JLM5 398 aa8.78□□□□□ -1
CUX1-202ENST00000292538 FXYD7P58549 80 aa8.78□□□□□ -1
CUX1-202ENST00000292538 RASL11AQ6T310 242 aa8.78□□□□□ -1
CUX1-202ENST00000292538 AMN1Q8IY45 258 aa8.78□□□□□ -1
CUX1-202ENST00000292538 C20orf173Q96LM9 149 aa8.78□□□□□ -1
CUX1-202ENST00000292538 GFRA4Q9GZZ7 299 aa8.78□□□□□ -1
CUX1-202ENST00000292538 FAM181BA6NEQ2 426 aa8.77□□□□□ -1
CUX1-202ENST00000292538 SMKR1H3BMG3 65 aa8.77□□□□□ -1
CUX1-202ENST00000292538 IGKV3-20P01619 116 aa8.77□□□□□ -1
CUX1-202ENST00000292538 MCRIP2Q9BUT9 160 aaKnown RBP8.77□□□□□ -1
CUX1-202ENST00000292538 DDTP30046 118 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms