RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 C18orf32Q8TCD1 76 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 MYOZ3Q8TDC0 251 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 PIMREGQ9BSJ6 248 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 CGB1A6NKQ9 187 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 TEX22C9J3V5 150 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 GNLYP22749 145 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 SHANK2-AS3Q9BTD1 123 aa12.92□□□□□ -0.34
CTCF-201ENST00000264010 RBPMS2Q6ZRY4 209 aaKnown RBP12.91□□□□□ -0.34
CTCF-201ENST00000264010 KIR3DL3Q8N743 410 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 IGHV3-35A0A0C4DH35 117 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 FCN3O75636 299 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 ATP5L2Q7Z4Y8 100 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 LY6G5BQ8NDX9 201 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 FOXC2Q99958 501 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 KALRNO60229 2985 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 NUP35Q8NFH5 326 aa12.91□□□□□ -0.34
CTCF-201ENST00000264010 RAI1Q7Z5J4 1906 aaPredicted RBP12.91□□□□□ -0.34
CTCF-201ENST00000264010 SMIM27A0A1W2PRY6 76 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 TAX1BP3O14907 124 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 Q0VG73 95 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 TMEM14CQ9P0S9 112 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 CRYGBP07316 175 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 IGF2BP2-AS1Q96M15 143 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 PSG8Q9UQ74 426 aa12.9□□□□□ -0.34
CTCF-201ENST00000264010 TET2Q6N021 2002 aaPredicted RBP12.89□□□□□ -0.35
CTCF-201ENST00000264010 I3L2K1 104 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 S100A4P26447 101 aaKnown RBP12.89□□□□□ -0.35
CTCF-201ENST00000264010 GTSCR1Q86UQ5 136 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 C10orf126Q8N4M7 172 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 TMEM189A5PLL7 270 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 NDUFA3O95167 84 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 RPL11P62913 178 aaKnown RBP12.89□□□□□ -0.35
CTCF-201ENST00000264010 LYPD1Q8N2G4 141 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 BPESC1Q9GZL8 116 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 DEFB125Q8N687 156 aa12.89□□□□□ -0.35
CTCF-201ENST00000264010 ZNF292O60281 2723 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 C9orf118A6NHY6 69 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 DTX2Q86UW9 622 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 NPBQ8NG41 125 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 EEF1AKMT3Q96AZ1 226 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 NAV3Q8IVL0 2385 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 OR11H12B2RN74 326 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 NDUFS7O75251 213 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 UBE2E1P51965 193 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 ATP5J2P56134 94 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 OR11H1Q8NG94 326 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 OR11H2Q8NH07 326 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 FAM168AQ92567 244 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 CCL19Q99731 98 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 IGHV3OR16-10A0A075B7F0 116 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 NPIPB5A8MRT5 1133 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 K7EP34 96 aa12.88□□□□□ -0.35
CTCF-201ENST00000264010 EBLN2Q6P2I7 272 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 LINC00173Q6ZV60 143 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 Q86TA4 180 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 CIARTQ8N365 385 aaPredicted RBP12.87□□□□□ -0.35
CTCF-201ENST00000264010 ZNF492Q9P255 531 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 IGKV1-17P01599 117 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 GP9P14770 177 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 RHOGP84095 191 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 DEFB104AQ8WTQ1 72 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 METTL26Q96S19 204 aa12.87□□□□□ -0.35
CTCF-201ENST00000264010 A0A1B0GUT8 65 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 K7EIM0 57 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 TMEM238LA0A1B0GVL6 79 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 PSMB11A5LHX3 300 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 A6NJY4 79 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.86□□□□□ -0.35
CTCF-201ENST00000264010 WFDC2Q14508 124 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 IGFBPL1Q8WX77 278 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 ASCL2Q99929 193 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 TRBV19A0A075B6N1 114 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 LY6LH3BQJ8 138 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 OR4X2Q8NGF9 303 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 PRELID3AQ96N28 172 aa12.86□□□□□ -0.35
CTCF-201ENST00000264010 IGHV3OR16-8A0A075B7F1 116 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 H3BRN7 92 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 SAA4P35542 130 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 NPFFO15130 113 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 DMXL1Q9Y485 3027 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 CT83Q5H943 113 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 ZNF491Q8N8L2 437 aa12.85□□□□□ -0.35
CTCF-201ENST00000264010 F5H697 171 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 HOXB4P17483 251 aaPredicted RBP12.84□□□□□ -0.35
CTCF-201ENST00000264010 HERVK_113P61574 105 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 Q6AWC8 147 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 NCOR2Q9Y618 2525 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 RPS20P60866 119 aaKnown RBP12.84□□□□□ -0.35
CTCF-201ENST00000264010 C15orf32Q32M92 178 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 CDSNQ15517 529 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 CLEC19AQ6UXS0 136 aa12.84□□□□□ -0.35
CTCF-201ENST00000264010 A0A1W2PPM0 123 aa12.83□□□□□ -0.35
CTCF-201ENST00000264010 IGLV2-8P01709 118 aa12.83□□□□□ -0.35
CTCF-201ENST00000264010 PDE6HQ13956 83 aa12.83□□□□□ -0.35
CTCF-201ENST00000264010 MRPL27Q9P0M9 148 aaKnown RBP12.83□□□□□ -0.35
CTCF-201ENST00000264010 SVEP1Q4LDE5 3571 aa12.83□□□□□ -0.35
CTCF-201ENST00000264010 C11orf71Q6IPW1 123 aa12.83□□□□□ -0.36
CTCF-201ENST00000264010 MS4A6AQ9H2W1 248 aa12.83□□□□□ -0.36
CTCF-201ENST00000264010 NCR2O95944 276 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 LTAP01374 205 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms