RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TP73-AS1Q9UF72 201 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 KLK9Q9UKQ9 250 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 USP9XQ93008 2570 aaPredicted RBP12.73□□□□□ -0.37
HOXD3-201ENST00000249440 BUB3O43684 328 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 GOSR1O95249 250 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 IGLC6P0CF74 106 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 RHOGP84095 191 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 FAM106AQ4KMX7 169 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 MUC21A0A0G2JKD1 596 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 MUC21A0A140T8X8 626 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 FABP5P3A8MUU1 101 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 ATP6V0E1O15342 81 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 TCF21O43680 179 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 MUC21Q5SSG8 566 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 ZFAND3Q9H8U3 227 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 SPTAN1Q13813 2472 aaKnown RBP12.72□□□□□ -0.37
HOXD3-201ENST00000249440 SVEP1Q4LDE5 3571 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 A0A087X0K7 114 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 A0A096LNJ9 63 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 NUDT3O95989 172 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 ORM1P02763 201 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 CKS2P33552 79 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 SAA4P35542 130 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 EFNA4P52798 201 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 PTTG1IPP53801 180 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 C12orf54Q6X4T0 127 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 AJUBAQ96IF1 538 aa12.72□□□□□ -0.37
HOXD3-201ENST00000249440 LOXL1Q08397 574 aaPredicted RBP12.71□□□□□ -0.37
HOXD3-201ENST00000249440 Q6ZVH6 145 aa12.71□□□□□ -0.38
HOXD3-201ENST00000249440 OR8A1Q8NGG7 326 aa12.71□□□□□ -0.38
HOXD3-201ENST00000249440 SLC50A1Q9BRV3 221 aa12.71□□□□□ -0.38
HOXD3-201ENST00000249440 UBTD1Q9HAC8 227 aa12.71□□□□□ -0.38
HOXD3-201ENST00000249440 RBAKDNA6NC62 111 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 NCR2O95944 276 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 ASH1LQ9NR48 2969 aaKnown RBP12.7□□□□□ -0.38
HOXD3-201ENST00000249440 HBDP02042 147 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 GNLYP22749 145 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 UBE2V1Q13404 147 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 ZNF575Q86XF7 245 aa12.7□□□□□ -0.38
HOXD3-201ENST00000249440 COX8AP10176 69 aa12.69□□□□□ -0.38
HOXD3-201ENST00000249440 HIST1H1AQ02539 215 aaPredicted RBP12.69□□□□□ -0.38
HOXD3-201ENST00000249440 BVES-AS1Q5T3Y7 98 aa12.69□□□□□ -0.38
HOXD3-201ENST00000249440 CLEC19AQ6UXS0 136 aa12.69□□□□□ -0.38
HOXD3-201ENST00000249440 EEF1AKMT3Q96AZ1 226 aa12.69□□□□□ -0.38
HOXD3-201ENST00000249440 CNFNQ9BYD5 112 aa12.69□□□□□ -0.38
HOXD3-201ENST00000249440 CCL25O15444 150 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 ERCC8Q13216 396 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 DPF1Q92782 380 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 CENPVL3A0A0U1RRI6 287 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 NPYP01303 97 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 LGALS9BQ3B8N2 356 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 LGALS9CQ6DKI2 356 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 CCDC140Q96MF4 163 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 BPESC1Q9GZL8 116 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 CSMD2Q7Z408 3487 aa12.68□□□□□ -0.38
HOXD3-201ENST00000249440 TRBV7-1A0A0A6YYK4 115 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 PRAC2D3DTV9 90 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 G3V318 75 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 PPBPP02775 128 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 LMO4P61968 165 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 PAX8Q06710 450 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 LINC01559Q495D7 138 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 RNF182Q8N6D2 247 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 VPS13CQ709C8 3753 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 CLPSL1A2RUU4 121 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 SMKR1H3BMG3 65 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 PPP1R14DQ9NXH3 145 aa12.67□□□□□ -0.38
HOXD3-201ENST00000249440 NPFFO15130 113 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 METTL26Q96S19 204 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 MSRB1Q9NZV6 116 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 IGHV3-66A0A0C4DH42 116 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 LINC01548A6NM66 108 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 IL17RELQ6ZVW7 336 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 PIP4P2Q8N4L2 257 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 DEFB125Q8N687 156 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 TENM4Q6N022 2769 aa12.66□□□□□ -0.38
HOXD3-201ENST00000249440 SFTPCP11686 197 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 PRSS57Q6UWY2 283 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 OR1N2Q8NGR9 330 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 RNF185Q96GF1 192 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 NPFFR1Q9GZQ6 430 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 MAP1LC3AQ9H492 121 aa12.65□□□□□ -0.38
HOXD3-201ENST00000249440 FXYD7P58549 80 aa12.65□□□□□ -0.39
HOXD3-201ENST00000249440 C5orf56Q8N8D9 126 aa12.65□□□□□ -0.39
HOXD3-201ENST00000249440 IFI27L1Q96BM0 104 aa12.65□□□□□ -0.39
HOXD3-201ENST00000249440 PSMG3-AS1Q96PY0 264 aa12.65□□□□□ -0.39
HOXD3-201ENST00000249440 UBR5O95071 2799 aaPredicted RBP12.64□□□□□ -0.39
HOXD3-201ENST00000249440 IGHV3OR16-13A0A075B7E8 117 aa12.64□□□□□ -0.39
HOXD3-201ENST00000249440 IGHV3-74A0A0B4J1X5 117 aa12.64□□□□□ -0.39
HOXD3-201ENST00000249440 CACNG7P62955 275 aa12.64□□□□□ -0.39
HOXD3-201ENST00000249440 TAX1BP3O14907 124 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 TMEM78Q5T7P6 136 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 MRPL53Q96EL3 112 aaKnown RBP12.63□□□□□ -0.39
HOXD3-201ENST00000249440 AGPAT4-IT1Q9H0P7 198 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 ATP5G2Q06055 141 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 VAMP3Q15836 100 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 HIF1ANQ9NWT6 349 aa12.63□□□□□ -0.39
HOXD3-201ENST00000249440 AKAP6Q13023 2319 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 C2orf91Q6ZV80 131 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms