RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 Q5PR19 223 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 C9JAW5 83 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 C8orf49Q96NF6 230 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 SDHAF1A6NFY7 115 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 H3BRN7 92 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 C15orf65H3BRN8 121 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 J3QLI3 93 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 CDKN1BP46527 198 aa10.84□□□□□ -0.67
SF3A1-201ENST00000215793 GAGE12JA6NER3 117 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 E9PQ18 207 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 GAGE1Q13065 139 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 GAGE4Q13068 117 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 GAGE5Q13069 117 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 COX11Q9Y6N1 276 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 YLPM1P49750 1951 aaKnown RBP10.83□□□□□ -0.68
SF3A1-201ENST00000215793 VWA8A3KMH1 1905 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 POLR3KQ9Y2Y1 108 aaPredicted RBP10.83□□□□□ -0.68
SF3A1-201ENST00000215793 TRBV20-1A0A075B6N2 111 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 SBF1O95248 1867 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF726P1Q15940 193 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 POU2AF1Q16633 256 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 MALRD1Q5VYJ5 2156 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 KAAG1Q9UBP8 84 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 V9GYV3 84 aa10.83□□□□□ -0.68
SF3A1-201ENST00000215793 RSPO1Q2MKA7 263 aaPredicted RBP10.82□□□□□ -0.68
SF3A1-201ENST00000215793 TCTEX1D4Q5JR98 221 aa10.82□□□□□ -0.68
SF3A1-201ENST00000215793 C11orf52Q96A22 123 aa10.82□□□□□ -0.68
SF3A1-201ENST00000215793 DAD1P61803 113 aa10.82□□□□□ -0.68
SF3A1-201ENST00000215793 MRPL51Q4U2R6 128 aaKnown RBP10.82□□□□□ -0.68
SF3A1-201ENST00000215793 INAFM2P0DMQ5 153 aa10.82□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF48Q96MX3 618 aaPredicted RBP10.82□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF561-AS1K7EIQ3 104 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 K7EM74 188 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 DUX4L9Q6RFH8 374 aaPredicted RBP10.81□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF114Q8NC26 417 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF625Q96I27 306 aaPredicted RBP10.81□□□□□ -0.68
SF3A1-201ENST00000215793 IGLC1P0CG04 106 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 PRSS57Q6UWY2 283 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF503-AS2A6NEH8 195 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 ADAMTSL5Q6ZMM2 481 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 THAP8Q8NA92 274 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 KLK9Q9UKQ9 250 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 SMIM27A0A1W2PRY6 76 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 F5H768 121 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 AZU1P20160 251 aa10.81□□□□□ -0.68
SF3A1-201ENST00000215793 SRSF2Q01130 221 aaKnown RBP10.81□□□□□ -0.68
SF3A1-201ENST00000215793 WISP1O95388 367 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 CR1LQ2VPA4 569 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 LGALS9BQ3B8N2 356 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 ANXA2RQ3ZCQ2 193 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 LGALS9CQ6DKI2 356 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 GAGE2AQ6NT46 116 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 PLXNA3P51805 1871 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 IGLV3-1P01715 115 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 PLA2G2CQ5R387 149 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 GTSF1LQ9H1H1 148 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 DOCK11Q5JSL3 2073 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF134P52741 427 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 TMEM243Q9BU79 118 aa10.8□□□□□ -0.68
SF3A1-201ENST00000215793 ELANEP08246 267 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 SLAQ13239 276 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 RSPO3Q9BXY4 272 aaPredicted RBP10.79□□□□□ -0.68
SF3A1-201ENST00000215793 FAM215AQ9Y5M1 114 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 FAM208BQ5VWN6 2430 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 PTPRDP23468 1912 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 A0A1B0GUS0 222 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 IGLC2P0DOY2 106 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 IGLC3P0DOY3 106 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 SMIM2Q9BVW6 85 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 SIP14410 1827 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 HAPLN4Q86UW8 402 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 TPSG1Q9NRR2 321 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 THSD7BQ9C0I4 1608 aa10.79□□□□□ -0.68
SF3A1-201ENST00000215793 ZNRF2Q8NHG8 242 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 ZNF524Q96C55 264 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 DOCK9Q9BZ29 2069 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 IGHV3-16A0A0C4DH30 117 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 SOCS3O14543 225 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 EREGO14944 169 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 MMP23AO75900 390 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 C1orf122Q6ZSJ8 110 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 C8orf31Q8N9H6 132 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 SPANXA1Q9NS26 97 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 C10orf91Q5T1B1 145 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PYGO2Q9BRQ0 406 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 H3BMM0 161 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 H3BUA1 57 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PRR20EP86478 221 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PRR20CP86479 221 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PRR20DP86480 221 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PRR20BP86481 221 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 PRR20AP86496 221 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 OR11H6Q8NGC7 330 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 FXYD5Q96DB9 178 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 Q96MF0 132 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 HEATR5AQ86XA9 2040 aa10.78□□□□□ -0.68
SF3A1-201ENST00000215793 SPINK8P0C7L1 97 aa10.77□□□□□ -0.68
SF3A1-201ENST00000215793 MAPK1IP1LQ8NDC0 245 aa10.77□□□□□ -0.68
SF3A1-201ENST00000215793 Q8NFD4 153 aa10.77□□□□□ -0.68
SF3A1-201ENST00000215793 SNHG12Q9BXW3 62 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms