RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MINOS1Q5TGZ0 78 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF826PQ6ZT77 177 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 MINOS1-NBL1R4GNA1 71 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 DENND4AQ7Z401 1863 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 IGHV3-13P01766 116 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 DAND5Q8N907 189 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 DUX5Q96PT3 197 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 TP53TG1Q9Y2A0 90 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 A0A087WV48 116 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 UFSP1Q6NVU6 142 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 TGFBR3LH3BV60 316 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 WFDC2Q14508 124 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 IGKV1-6A0A0C4DH72 117 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 SH2D6Q7Z4S9 175 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 IMMP1LQ96LU5 166 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 A0A1B0GXF2 115 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 PRSS57Q6UWY2 283 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 WFDC3Q8IUB2 231 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 C11orf44Q8N8P7 122 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 PRR19A6NJB7 356 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 SIGLEC15Q6ZMC9 328 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 C10orf105Q8TEF2 133 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 RNF138Q8WVD3 245 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 WIPF3A6NGB9 483 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 FAM223BA6NKX1 122 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 FAM223AQ8IWN6 122 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 FXYD5Q96DB9 178 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 PMS2P5A8MQ11 134 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 RPL36AP83881 106 aaKnown RBP3.76□□□□□ -1.81
SCN1A-220ENST00000641603 CRIPAKQ8N1N5 446 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 RPL36ALQ969Q0 106 aaKnown RBP3.76□□□□□ -1.81
SCN1A-220ENST00000641603 PLXNB2O15031 1838 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 CEP290O15078 2479 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 GATA4P43694 442 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 FXYD2P54710 66 aa3.76□□□□□ -1.81
SCN1A-220ENST00000641603 PRIMA1Q86XR5 153 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 MGAMO43451 1857 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 FAM186AA6NE01 2351 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 TDRG1Q3Y452 100 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 TEX36Q5VZQ5 186 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 NEU4Q8WWR8 484 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-220ENST00000641603 ORMDL1Q9P0S3 153 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 ICOSQ9Y6W8 199 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 IGKV1-39P01597 117 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 IGKV1D-39P04432 117 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 CECR9P0C854 216 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 GATA2P23769 480 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-220ENST00000641603 TMEM240Q5SV17 173 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 AMTNQ6UX39 209 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 H3BRN7 92 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 H3BTX0 84 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 K7ERJ3 54 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 FER1L5A0AVI2 2057 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 IGHV3-21A0A0B4J1V1 117 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 FAM236DA0A1B0GTK5 79 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 LINC00473A8K010 186 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 FAM236CP0DP71 79 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 PSMB8P28062 276 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 ODF1Q14990 250 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 GFRALQ6UXV0 394 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 ANXA2RQ3ZCQ2 193 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 SERP2Q8N6R1 65 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 JPT2Q9H910 190 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 ACACAQ13085 2346 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 IGHV1-69P01742 117 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 LY6DQ14210 128 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 DUX4L9Q6RFH8 374 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-220ENST00000641603 EIF4EBP1Q13541 118 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-220ENST00000641603 C16orf47Q6ZP98 133 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-220ENST00000641603 NDUFA11Q86Y39 141 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 RNF152Q8N8N0 203 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 METRNQ9UJH8 293 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 DOCK4Q8N1I0 1966 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 M0R1W7 72 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 CD7P09564 240 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 SPINK14Q6IE38 97 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 USMG5Q96IX5 58 aa3.75□□□□□ -1.81
SCN1A-220ENST00000641603 THADAQ6YHU6 1953 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 NUPR1O60356 82 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 LINC00526Q96FQ7 95 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF833PQ6ZTB9 187 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 PLXNA3P51805 1871 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 CACNA1DQ01668 2161 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 HES7Q9BYE0 225 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 F5H768 121 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 ERCC8Q13216 396 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 PCP2Q8IVA1 136 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 DSCR8Q96T75 97 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 SMIM9A6NGZ8 99 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 GATD1Q8NB37 220 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 Q8TCH9 128 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 PAX4O43316 350 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 UCNP55089 124 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 RPS28P62857 69 aaKnown RBP3.74□□□□□ -1.81
SCN1A-220ENST00000641603 BAALC-AS2P0C853 105 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 STPG1Q5TH74 334 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 TMEM92Q6UXU6 159 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 COX7CP15954 63 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 PMS2CLQ68D20 193 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 RNASE4P34096 147 aaKnown RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms