RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RNF24Q9Y225 148 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 FAT1Q14517 4588 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 CT45A10P0DMU9 189 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 AP3S2P59780 193 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 KRTAP10-1P60331 282 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 CDPF1Q6NVV7 123 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 TEPPQ6URK8 271 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 PYGO2Q9BRQ0 406 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 NPVFQ9HCQ7 196 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 FUT9Q9Y231 359 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 ICOSQ9Y6W8 199 aa10.27□□□□□ -0.77
SYNE2-228ENST00000639659 PAX4O43316 350 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 TNFSF8P32971 234 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 DAZ2Q13117 558 aaKnown RBP10.26□□□□□ -0.77
SYNE2-228ENST00000639659 ICAM4Q14773 271 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 MORN5Q5VZ52 161 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 ZNF546Q86UE3 836 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 ZBTB8BQ8NAP8 495 aaPredicted RBP10.26□□□□□ -0.77
SYNE2-228ENST00000639659 OR10P1Q8NGE3 313 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 DYNC2LI1Q8TCX1 351 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 PXMP4Q9Y6I8 212 aa10.26□□□□□ -0.77
SYNE2-228ENST00000639659 AGPAT2O15120 278 aa10.25□□□□□ -0.77
SYNE2-228ENST00000639659 OPCMLQ14982 345 aa10.25□□□□□ -0.77
SYNE2-228ENST00000639659 ZNF431Q8TF32 576 aaPredicted RBP10.25□□□□□ -0.77
SYNE2-228ENST00000639659 TRIM63Q969Q1 353 aa10.25□□□□□ -0.77
SYNE2-228ENST00000639659 C18orf15Q96N68 181 aa10.25□□□□□ -0.77
SYNE2-228ENST00000639659 SLC25A21Q9BQT8 299 aaPredicted RBP10.25□□□□□ -0.77
SYNE2-228ENST00000639659 MRPS26Q9BYN8 205 aaKnown RBP10.25□□□□□ -0.77
SYNE2-228ENST00000639659 FLG2Q5D862 2391 aaPredicted RBP10.24□□□□□ -0.77
SYNE2-228ENST00000639659 A0A087WTM6 91 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 NOL3O60936 208 aaKnown RBP10.24□□□□□ -0.77
SYNE2-228ENST00000639659 ID3Q02535 119 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 ERCC8Q13216 396 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 PXDC1Q5TGL8 231 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 C10orf113Q5VZT2 155 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 NFE4Q86UQ8 179 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 ZNF680Q8NEM1 530 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 RAB2BQ8WUD1 216 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 SMIM8Q96KF7 97 aa10.24□□□□□ -0.77
SYNE2-228ENST00000639659 MRPL16Q9NX20 251 aaKnown RBP10.24□□□□□ -0.77
SYNE2-228ENST00000639659 MYCBP2O75592 4640 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 C7orf71A4D174 169 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 NPIPB6E9PJ23 425 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 H3BQ15 152 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 BTN1A1Q13410 526 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 C8orf49Q96NF6 230 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 KLF12Q9Y4X4 402 aa10.23□□□□□ -0.77
SYNE2-228ENST00000639659 TRAV5A0A0B4J249 113 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 C9orf170A2RU37 121 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 FAM229AH3BQW9 127 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 J3QL48 77 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 K7EPK0 472 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 SLC25A5P05141 298 aaKnown RBP10.22□□□□□ -0.77
SYNE2-228ENST00000639659 IGLC2P0DOY2 106 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 RNASE4P34096 147 aaKnown RBP10.22□□□□□ -0.77
SYNE2-228ENST00000639659 TMEM14EPQ6UXP3 125 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 EIF4E3Q8N5X7 224 aaKnown RBP10.22□□□□□ -0.77
SYNE2-228ENST00000639659 C11orf72Q8NBR9 251 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 TMEM37Q8WXS4 190 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 ODF3Q96PU9 254 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 MGST2Q99735 147 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 SOSTQ9BQB4 213 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 SLIRPQ9GZT3 109 aaKnown RBP10.22□□□□□ -0.77
SYNE2-228ENST00000639659 GSKIPQ9P0R6 139 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 LY96Q9Y6Y9 160 aa10.22□□□□□ -0.77
SYNE2-228ENST00000639659 TRAV9-2A0A087WT02 112 aa10.21□□□□□ -0.77
SYNE2-228ENST00000639659 M0R3E3 92 aa10.21□□□□□ -0.77
SYNE2-228ENST00000639659 ZNF324O75467 553 aaPredicted RBP10.21□□□□□ -0.77
SYNE2-228ENST00000639659 GCSHP23434 173 aa10.21□□□□□ -0.77
SYNE2-228ENST00000639659 CD300CQ08708 224 aa10.21□□□□□ -0.77
SYNE2-228ENST00000639659 ARL16Q0P5N6 197 aa10.21□□□□□ -0.77
SYNE2-228ENST00000639659 FNDC10F2Z333 226 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 RGS13O14921 159 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 PRAF2O60831 178 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 IAH1Q2TAA2 248 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-228ENST00000639659 MIC13Q5XKP0 118 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 LYPD5Q6UWN5 251 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 Q6ZSN1 163 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 SAT2Q96F10 170 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-228ENST00000639659 ST6GAL2Q96JF0 529 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 ARPC5LQ9BPX5 153 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 LINC00467Q9BRT7 94 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 MSRB1Q9NZV6 116 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 PRO0255Q9UI72 69 aa10.2□□□□□ -0.78
SYNE2-228ENST00000639659 E5RGE8 158 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 SPINK4O60575 86 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 OR4E1P0C645 316 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 CAMLGP49069 296 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 TCL1AP56279 114 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 MRPL23Q16540 153 aaKnown RBP10.19□□□□□ -0.78
SYNE2-228ENST00000639659 Q6ZRG5 221 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 WFDC10BQ8IUB3 73 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 TP53TG3Q9ULZ0 132 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 FLVCR2Q9UPI3 526 aa10.19□□□□□ -0.78
SYNE2-228ENST00000639659 RCL1Q9Y2P8 373 aaKnown RBP10.19□□□□□ -0.78
SYNE2-228ENST00000639659 SRRM2Q9UQ35 2752 aaKnown RBP10.19□□□□□ -0.78
SYNE2-228ENST00000639659 VPS13BQ7Z7G8 4022 aa10.18□□□□□ -0.78
SYNE2-228ENST00000639659 IGLV5-52A0A0A0MRZ9 124 aa10.18□□□□□ -0.78
SYNE2-228ENST00000639659 TRGV4A0A0C4DH28 118 aa10.18□□□□□ -0.78
SYNE2-228ENST00000639659 L7N2F9 121 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms