RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SPXQ9BT56 116 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 PARD6GQ9BYG4 376 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-217ENST00000637988 CHKB-CPT1BH3BT56 60 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 PRB1P04280 392 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 PTPRQQ9UMZ3 2332 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 PRSS33Q8NF86 280 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 PIFOQ8TCI5 191 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 SCRT1Q9BWW7 348 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 MRPL36Q9P0J6 103 aaKnown RBP4.98□□□□□ -1.61
SCN1A-217ENST00000637988 A0A087WWL8 130 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 DKK1O94907 266 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE6Q13070 117 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 C1orf194Q5T5A4 169 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 CBLN2Q8IUK8 224 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 HCFC1P51610 2035 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 EFNB3Q15768 340 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 EXOC3-AS1Q8N2X6 119 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 MUC4Q99102 2169 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 SLC17A3O00476 420 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 PYYP10082 97 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 C14orf178Q8N769 122 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-217ENST00000637988 RNASE7Q9H1E1 156 aaKnown RBP4.97□□□□□ -1.61
SCN1A-217ENST00000637988 NPDC1Q9NQX5 325 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF106Q9H2Y7 1883 aaKnown RBP4.97□□□□□ -1.61
SCN1A-217ENST00000637988 NDUFB1O75438 58 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 RPL23P62829 140 aaKnown RBP4.97□□□□□ -1.61
SCN1A-217ENST00000637988 RNF152Q8N8N0 203 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 NDUFA12Q9UI09 145 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 SORL1Q92673 2214 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 KIAA1549LQ6ZVL6 1849 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 C16orf74Q96GX8 76 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 ESDP10768 282 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 KIR2DL5BQ8NHK3 375 aa4.97□□□□□ -1.61
SCN1A-217ENST00000637988 ETDCA0A1B0GVM5 59 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 IGKV1D-12P01611 117 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 INSL3P51460 131 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 TCF15Q12870 199 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 NHLRC3Q5JS37 347 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 C5orf24Q7Z6I8 188 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 HIVEP2P31629 2446 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 IGHV1OR15-1A0A075B7D0 117 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 A0A087WWC5 75 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 IGHV3-16A0A0C4DH30 117 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 FGF16O43320 207 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 C9orf62Q8N4C0 152 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 IMMP2LQ96T52 175 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 MIXL1Q9H2W2 232 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 OSTCQ9NRP0 149 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 LAMTOR2Q9Y2Q5 125 aa4.96□□□□□ -1.61
SCN1A-217ENST00000637988 LINC01590Q5TEZ4 76 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 LYPD2Q6UXB3 125 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 IFI27L1Q96BM0 104 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 SH2D1AO60880 128 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 SEC61GP60059 68 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 FOXE3Q13461 319 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 TRAF4Q9BUZ4 470 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-217ENST00000637988 MDKP21741 143 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-217ENST00000637988 VWCEQ96DN2 955 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 SCRT2Q9NQ03 307 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 C5orf63A6NC05 138 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 CXCL2P19875 107 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 ADMP35318 185 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 C5orf30Q96GV9 206 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 C18orf12Q96KH6 178 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 NOP10Q9NPE3 64 aaKnown RBP4.96□□□□□ -1.62
SCN1A-217ENST00000637988 NIT1Q86X76 327 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 TMEM141Q96I45 108 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 GNB1LQ9BYB4 327 aa4.96□□□□□ -1.62
SCN1A-217ENST00000637988 PCDH15Q96QU1 1955 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 A0A096LPF7 62 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 SHISA3A0PJX4 238 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 A8MXK9 166 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 ZNF134P52741 427 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 IFITM3Q01628 133 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 PLA2G2CQ5R387 149 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 FOXI2Q6ZQN5 318 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 SOCS3O14543 225 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 EGR2P11161 476 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-217ENST00000637988 PFN2P35080 140 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 GZMMP51124 257 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 CD177Q8N6Q3 437 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 TIMM17AQ99595 171 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 SPG11Q96JI7 2443 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1-5P01602 117 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 C9orf153Q5TBE3 101 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 GPHB5Q86YW7 130 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 THSD7BQ9C0I4 1608 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 ATP5G3P48201 142 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 NEGR1Q7Z3B1 354 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 ZNRF2Q8NHG8 242 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 A0A0J9YY99 117 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 MALRD1Q5VYJ5 2156 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 IGLL5B9A064 214 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 LAIR2Q6ISS4 152 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 CLPSL2Q6UWE3 100 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 KLK9Q9UKQ9 250 aa4.95□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1D-43A0A0B4J1Z2 117 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 D6R8Y8 96 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 H3BQ85 93 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 TFF1P04155 84 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms