RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 XCL2Q9UBD3 114 aa13.27□□□□□ -0.29
CLN3-259ENST00000637551 A0A0D9SG52 128 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 A0A0J9YWU9 116 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 ARPC5O15511 151 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 OR7C2O60412 319 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 TSPOP30536 169 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 CASC10Q5T4H9 136 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 TMEM256Q8N2U0 113 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 HSD17B11Q8NBQ5 300 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 GOLT1BQ9Y3E0 138 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 X6R8D5 127 aa13.26□□□□□ -0.29
CLN3-259ENST00000637551 TRBV7-9A0A0J9YWB2 115 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 TEX48A0A1B0GUV7 120 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 NPIPB6E9PJ23 425 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 PYYP10082 97 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 UBE2L3P68036 154 aaKnown RBP13.25□□□□□ -0.29
CLN3-259ENST00000637551 HIST1H1AQ02539 215 aaPredicted RBP13.25□□□□□ -0.29
CLN3-259ENST00000637551 KCNRGQ8N5I3 272 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 OR10G4Q8NGN3 311 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 OR10G9Q8NGN4 311 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 OR10G7Q8NGN6 311 aa13.25□□□□□ -0.29
CLN3-259ENST00000637551 INSP01308 110 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 NMBP08949 121 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 DEFB1P60022 68 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 IGFL4Q6B9Z1 124 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 RPL7L1Q6DKI1 246 aaKnown RBP13.24□□□□□ -0.29
CLN3-259ENST00000637551 TCTE3Q8IZS6 198 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 SLC35B3Q9H1N7 401 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 RFNGQ9Y644 331 aa13.24□□□□□ -0.29
CLN3-259ENST00000637551 RBAKDNA6NC62 111 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 SLC25A5P05141 298 aaKnown RBP13.23□□□□□ -0.29
CLN3-259ENST00000637551 STAG3L2P0CL84 134 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 STAG3L3P0CL85 134 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 CDKN1BP46527 198 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 CDC34P49427 236 aaPredicted RBP13.23□□□□□ -0.29
CLN3-259ENST00000637551 EIF5AP63241 154 aaKnown RBP13.23□□□□□ -0.29
CLN3-259ENST00000637551 RPP25LQ8N5L8 163 aaKnown RBP13.23□□□□□ -0.29
CLN3-259ENST00000637551 ZNF503Q96F45 646 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 LINC00477Q96M19 166 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 ARPC5LQ9BPX5 153 aa13.23□□□□□ -0.29
CLN3-259ENST00000637551 LCE6AA0A183 80 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 IGKV3-20P01619 116 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 HLA-DMBP28068 263 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 RAB2AP61019 212 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 FAM74A1Q5RGS3 127 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 C9orf47Q6ZRZ4 202 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 SUN5Q8TC36 379 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 RXFP4Q8TDU9 374 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 PPP1R14DQ9NXH3 145 aa13.22□□□□□ -0.29
CLN3-259ENST00000637551 CSMD3Q7Z407 3707 aa13.21□□□□□ -0.29
CLN3-259ENST00000637551 IGHV4-28A0A0C4DH34 117 aa13.21□□□□□ -0.29
CLN3-259ENST00000637551 NUPR2A6NF83 97 aa13.21□□□□□ -0.29
CLN3-259ENST00000637551 CRXO43186 299 aaPredicted RBP13.21□□□□□ -0.29
CLN3-259ENST00000637551 CSN1S1P47710 185 aa13.21□□□□□ -0.29
CLN3-259ENST00000637551 BLNKQ8WV28 456 aa13.21□□□□□ -0.29
CLN3-259ENST00000637551 ACTR3CQ9C0K3 210 aaPredicted RBP13.21□□□□□ -0.29
CLN3-259ENST00000637551 H3BTX0 84 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 OR10J4P0C629 311 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 LEPP41159 167 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 TMED6Q8WW62 240 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 RAB24Q969Q5 203 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 ST6GAL2Q96JF0 529 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 OTORQ9NRC9 128 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 CYTL1Q9NRR1 136 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 TMEM167BQ9NRX6 74 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 LENEPQ9Y5L5 61 aa13.2□□□□□ -0.3
CLN3-259ENST00000637551 CXorf1O96002 111 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 HBE1P02100 147 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 ICAM4Q14773 271 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 SPINK13Q1W4C9 94 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 C1orf158Q8N1D5 194 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 OR11H4Q8NGC9 324 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 C11orf45Q8TAV5 145 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 PHYHIPLQ96FC7 376 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 SH3BGRL3Q9H299 93 aa13.19□□□□□ -0.3
CLN3-259ENST00000637551 CTXND1A0A1B0GTU2 59 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 SERTM2A0A1B0GWG4 89 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 KANTRA0A1W2PQU2 76 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 UMAD1C9J7I0 102 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 C11orf94C9JXX5 98 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 M0R2Z0 102 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 M0R3E3 92 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 BCL2L11O43521 198 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 SEC11BP0C7V7 166 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 CRISP2P16562 243 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 AKR1C8PQ5T2L2 129 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 FAM122CQ6P4D5 195 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 Q9H3A6 140 aa13.18□□□□□ -0.3
CLN3-259ENST00000637551 PRAC2D3DTV9 90 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 H7BYZ3 331 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 SNRPCP09234 159 aaKnown RBP13.17□□□□□ -0.3
CLN3-259ENST00000637551 RBMY1A1P0DJD3 496 aaKnown RBP13.17□□□□□ -0.3
CLN3-259ENST00000637551 RBMY1CP0DJD4 496 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 ARL14EPLP0DKL9 152 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 TAS2R60P59551 318 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 RBMY1FQ15415 496 aaKnown RBP13.17□□□□□ -0.3
CLN3-259ENST00000637551 RRN3P1Q2M238 152 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 EXOC3-AS1Q8N2X6 119 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 FAM19A4Q96LR4 140 aa13.17□□□□□ -0.3
CLN3-259ENST00000637551 TMEM208Q9BTX3 173 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 239.5 ms