RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 LINC01548A6NM66 108 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 DEFB108AA8MXU0 73 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 C12orf77C9JDV5 145 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 IGHV3-43DP0DP04 118 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 LEPP41159 167 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 MZT1Q08AG7 82 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 LY6DQ14210 128 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 MAPKAPK5-AS1Q8N8E1 139 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 GATD1Q8NB37 220 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 NTN5Q8WTR8 489 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-213ENST00000636759 ITLN1Q8WWA0 313 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 UCN2Q96RP3 112 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 TRGV9Q99603 122 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 PRNDQ9UKY0 176 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 SRRM4A7MD48 611 aaKnown RBP5.44□□□□□ -1.54
SCN1A-213ENST00000636759 OOSP1A8MZH6 123 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 WISP2O76076 250 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 FAM167A-AS1Q96KT0 104 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 MLST8Q9BVC4 326 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 SRXN1Q9BYN0 137 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 PRDM14Q9GZV8 571 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 TRAV3A0A0B4J244 114 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 OOEPA6NGQ2 149 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 DLL1O00548 723 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 PLAUP00749 431 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 PLA2G2CQ5R387 149 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 TMEM219Q86XT9 240 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 WI2-2373I1.2A0A1W2PRP0 233 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 J3QT63 122 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 SPINT2O43291 252 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 TNFRSF6BO95407 300 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 IGLC6P0CF74 106 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 GAGE2AQ6NT46 116 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 AAED1Q7RTV5 226 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 PRNTQ86SH4 94 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 GGNQ86UU5 652 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 AMN1Q8IY45 258 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 RFESDQ8TAC1 157 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 RTL8AQ9BWD3 113 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 GNG12Q9UBI6 72 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF256Q9Y2P7 627 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-213ENST00000636759 CD7P09564 240 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 UBE2D3P61077 147 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 UBE2D2P62837 147 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF56Q15929 161 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 MORN5Q5VZ52 161 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 Q8IYB0 196 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 C3orf22Q8N5N4 141 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 MYOZ3Q8TDC0 251 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 DEFB126Q9BYW3 111 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 FAM236AA0A1B0GUQ0 79 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 FAM236BA0A1B0GV22 79 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 C15orf61A6NNL5 157 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 CECR9P0C854 216 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 UCNP55089 124 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 Q0VFX4 171 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 FOXF2Q12947 444 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 PMVKQ15126 192 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 FAM104BQ5XKR9 115 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 SBSPONQ8IVN8 264 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 Q8N1Y9 231 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 NPIPB3Q92617 1050 aa5.43□□□□□ -1.54
SCN1A-213ENST00000636759 DOCK10Q96BY6 2186 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 UQCRQO14949 82 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 NDUFA3O95167 84 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 LIFP15018 202 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 EIF4EBP1Q13541 118 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-213ENST00000636759 SPRNQ5BIV9 151 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 FAM53AQ6NSI3 398 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-213ENST00000636759 ZMAT4Q9H898 229 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 MRPL35Q9NZE8 188 aaKnown RBP5.42□□□□□ -1.54
SCN1A-213ENST00000636759 TECTAO75443 2155 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 LINC01619G3V211 115 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 TCRAP04437 139 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 CCL3P10147 92 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF493Q6ZR52 646 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 ASCL5Q7RTU5 278 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 IGKV1OR2-108A0A075B7D4 117 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 DUX4L9Q6RFH8 374 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-213ENST00000636759 FXYD5Q96DB9 178 aa5.42□□□□□ -1.54
SCN1A-213ENST00000636759 F8WDY8 70 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 SSR4P51571 173 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 RPS28P62857 69 aaKnown RBP5.41□□□□□ -1.54
SCN1A-213ENST00000636759 MRPL51Q4U2R6 128 aaKnown RBP5.41□□□□□ -1.54
SCN1A-213ENST00000636759 LINC00305Q7Z4B0 112 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 RITA1Q96K30 269 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 ODF3Q96PU9 254 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 SPANXDQ9BXN6 97 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 TRIOBPQ9H2D6 2365 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 A0A1W2PNU3 283 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-213ENST00000636759 SMKR1H3BMG3 65 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 ZNHIT1O43257 154 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 PLNP26678 52 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 Q86TA4 180 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF714Q96N38 554 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 IFI27L2Q9H2X8 130 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 NXT2Q9NPJ8 142 aaKnown RBP5.41□□□□□ -1.54
SCN1A-213ENST00000636759 IGHV3OR15-7A0A075B7D8 119 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF503-AS2A6NEH8 195 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 H3BMM0 161 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms