RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 PRB4P10163 310 aaPredicted RBP15.36■□□□□ 0.05
CLN3-245ENST00000636172 SNRPD3P62318 126 aaKnown RBP15.36■□□□□ 0.05
CLN3-245ENST00000636172 SRSF3P84103 164 aaKnown RBP15.36■□□□□ 0.05
CLN3-245ENST00000636172 BEAN1Q3B7T3 259 aa15.36■□□□□ 0.05
CLN3-245ENST00000636172 CLEC5AQ9NY25 188 aa15.36■□□□□ 0.05
CLN3-245ENST00000636172 ZNF705FA8MVS1 300 aaPredicted RBP15.35■□□□□ 0.05
CLN3-245ENST00000636172 GNG5P63218 68 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 PSMG4Q5JS54 123 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 COMMD7Q86VX2 200 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 C5orf17Q8NAS9 161 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 MRPL53Q96EL3 112 aaKnown RBP15.35■□□□□ 0.05
CLN3-245ENST00000636172 TXNDC17Q9BRA2 123 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 PRELID1Q9Y255 219 aa15.35■□□□□ 0.05
CLN3-245ENST00000636172 RAB19A4D1S5 217 aa15.34■□□□□ 0.05
CLN3-245ENST00000636172 EPDR1Q9UM22 224 aa15.34■□□□□ 0.05
CLN3-245ENST00000636172 PRAC2D3DTV9 90 aa15.33■□□□□ 0.05
CLN3-245ENST00000636172 ODF3L2Q3SX64 289 aa15.33■□□□□ 0.05
CLN3-245ENST00000636172 ZNF738Q8NE65 137 aa15.33■□□□□ 0.05
CLN3-245ENST00000636172 CMTM2Q8TAZ6 248 aa15.33■□□□□ 0.05
CLN3-245ENST00000636172 MAP6D1Q9H9H5 199 aa15.33■□□□□ 0.05
CLN3-245ENST00000636172 SCO2A0A1W2PP80 73 aa15.33■□□□□ 0.04
CLN3-245ENST00000636172 C9JQL5 133 aa15.33■□□□□ 0.04
CLN3-245ENST00000636172 DEFB1P60022 68 aa15.33■□□□□ 0.04
CLN3-245ENST00000636172 RPUSD4Q96CM3 377 aaKnown RBP15.33■□□□□ 0.04
CLN3-245ENST00000636172 TCEAL7Q9BRU2 100 aa15.33■□□□□ 0.04
CLN3-245ENST00000636172 RPH3ALQ9UNE2 315 aa15.33■□□□□ 0.04
CLN3-245ENST00000636172 DIRC3C9JPN6 131 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 PDE6DO43924 150 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 TCRAP04437 139 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 CD7P09564 240 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 CSN1S1P47710 185 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 DEFB131AP59861 70 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 PEA15Q15121 130 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 MGAM2Q2M2H8 2515 aa15.32■□□□□ 0.04
CLN3-245ENST00000636172 G3V4G9 280 aa15.31■□□□□ 0.04
CLN3-245ENST00000636172 PEX7O00628 323 aa15.31■□□□□ 0.04
CLN3-245ENST00000636172 ARL6IP6Q8N6S5 226 aa15.31■□□□□ 0.04
CLN3-245ENST00000636172 ATG101Q9BSB4 218 aa15.31■□□□□ 0.04
CLN3-245ENST00000636172 IGKV2-40A0A087WW87 121 aaPredicted RBP15.3■□□□□ 0.04
CLN3-245ENST00000636172 F6UZH7 168 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 IGKV2D-40P01614 121 aaPredicted RBP15.3■□□□□ 0.04
CLN3-245ENST00000636172 EGFEM1PQ0D2K5 195 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 SAMD5Q5TGI4 173 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 HIST1H2BAQ96A08 127 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 C11orf52Q96A22 123 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 SMDT1Q9H4I9 107 aa15.3■□□□□ 0.04
CLN3-245ENST00000636172 F6UB75 175 aa15.29■□□□□ 0.04
CLN3-245ENST00000636172 SRP19P09132 144 aaKnown RBP15.29■□□□□ 0.04
CLN3-245ENST00000636172 GOLT1AQ6ZVE7 132 aa15.29■□□□□ 0.04
CLN3-245ENST00000636172 EIF4E3Q8N5X7 224 aaKnown RBP15.29■□□□□ 0.04
CLN3-245ENST00000636172 C19orf73Q9NVV2 129 aa15.29■□□□□ 0.04
CLN3-245ENST00000636172 OR11H12B2RN74 326 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 NDUFS6O75380 124 aaKnown RBP15.28■□□□□ 0.04
CLN3-245ENST00000636172 KRTAP10-11P60412 298 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 ZNF124Q15973 351 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 GDF5OSQ5U4N7 250 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 APRG1Q8IVJ8 170 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 CYB561D1Q8N8Q1 229 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 C2CD4CQ8TF44 421 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 FAM110AQ9BQ89 295 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 TREM1Q9NP99 234 aa15.28■□□□□ 0.04
CLN3-245ENST00000636172 TMEM250H0YL14 139 aa15.27■□□□□ 0.04
CLN3-245ENST00000636172 ZNF705DP0CH99 300 aaPredicted RBP15.27■□□□□ 0.04
CLN3-245ENST00000636172 ZNF705BP0CI00 300 aaPredicted RBP15.27■□□□□ 0.04
CLN3-245ENST00000636172 UQCC3Q6UW78 93 aa15.27■□□□□ 0.04
CLN3-245ENST00000636172 OR8A1Q8NGG7 326 aa15.27■□□□□ 0.04
CLN3-245ENST00000636172 LINC00479Q96M42 142 aa15.27■□□□□ 0.04
CLN3-245ENST00000636172 NOTCH1P46531 2555 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 CMC4P56277 68 aaPredicted RBP15.27■□□□□ 0.03
CLN3-245ENST00000636172 FOXI2Q6ZQN5 318 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 GTSCR1Q86UQ5 136 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 SLC7A5P1Q8MH63 180 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 VGLL1Q99990 258 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 DERL1Q9BUN8 251 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 WFDC10AQ9H1F0 79 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 SAV1Q9H4B6 383 aaPredicted RBP15.27■□□□□ 0.03
CLN3-245ENST00000636172 NBEAL1Q6ZS30 2694 aa15.27■□□□□ 0.03
CLN3-245ENST00000636172 TRAV8-1A0A0A6YYK1 113 aa15.26■□□□□ 0.03
CLN3-245ENST00000636172 SERTM2A0A1B0GWG4 89 aa15.26■□□□□ 0.03
CLN3-245ENST00000636172 KNCNA6PVL3 124 aa15.26■□□□□ 0.03
CLN3-245ENST00000636172 SLC35B3Q9H1N7 401 aa15.26■□□□□ 0.03
CLN3-245ENST00000636172 TRAV34A0A0B4J273 112 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 A0A0J9YX75 114 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 RBAKDNA6NC62 111 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 IGLV2-11P01706 119 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 AKR1C3P42330 323 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 CEBPGP53567 150 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 ERCC8Q13216 396 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 OR10J6PQ8NGY7 276 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 PRR25Q96S07 402 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 KLF12Q9Y4X4 402 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 AGRNO00468 2067 aa15.25■□□□□ 0.03
CLN3-245ENST00000636172 NPIPB6E9PJ23 425 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 K7EQM0 130 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 HIST1H1AQ02539 215 aaPredicted RBP15.24■□□□□ 0.03
CLN3-245ENST00000636172 NDUFA5Q16718 116 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 ACTL10Q5JWF8 245 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 EBLN2Q6P2I7 272 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 C9orf47Q6ZRZ4 202 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 TMEM75Q8N9X5 138 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms