RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TSKUQ8WUA8 353 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 ZNF785A8K8V0 405 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 ZC2HC1AQ96GY0 325 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 SAMD10Q9BYL1 202 aa8.28□□□□□ -1.08
CUX1-221ENST00000622516 RPP21Q9H633 154 aaKnown RBP8.28□□□□□ -1.08
CUX1-221ENST00000622516 TRAV30A0A087WSZ9 112 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 A1L4Q6 167 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 Q6ZWC4 215 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 FAM19A2Q8N3H0 131 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 MAPK1IP1LQ8NDC0 245 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 BBC3Q96PG8 261 aaPredicted RBP8.27□□□□□ -1.09
CUX1-221ENST00000622516 PIMREGQ9BSJ6 248 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 RNF114Q9Y508 228 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 ZNF705FA8MVS1 300 aaPredicted RBP8.27□□□□□ -1.09
CUX1-221ENST00000622516 PMCHP20382 165 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 C8orf49Q96NF6 230 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 TPPP3Q9BW30 176 aa8.27□□□□□ -1.09
CUX1-221ENST00000622516 IGKV2-40A0A087WW87 121 aaPredicted RBP8.26□□□□□ -1.09
CUX1-221ENST00000622516 IGKV2D-40P01614 121 aaPredicted RBP8.26□□□□□ -1.09
CUX1-221ENST00000622516 PAX8Q06710 450 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 TDRG1Q3Y452 100 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 TMSB15BA0A087X1C1 80 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 TRBV9A0A0B4J1U6 114 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 C19orf71A6NCJ1 209 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 FOXA3P55318 350 aaPredicted RBP8.26□□□□□ -1.09
CUX1-221ENST00000622516 TOMM20LQ6UXN7 152 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 C10orf105Q8TEF2 133 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 VPS25Q9BRG1 176 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 PRSS22Q9GZN4 317 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 PSG8Q9UQ74 426 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 SMAD5-AS1Q9Y6J3 95 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 CCDC168Q8NDH2 2452 aa8.26□□□□□ -1.09
CUX1-221ENST00000622516 MUC21A0A0G2JKD1 596 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 MUC21A0A140T8X8 626 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 DIRC3C9JPN6 131 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 HLA-DQA1P01909 254 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 APOHP02749 345 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 ZNF705DP0CH99 300 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 ZNF705BP0CI00 300 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 MUC21Q5SSG8 566 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 ZNF705AQ6ZN79 300 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 C5orf56Q8N8D9 126 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 Q8TAT8 98 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 PIFOQ8TCI5 191 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 SELENOKQ9Y6D0 94 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 UBR5O95071 2799 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 IGHV1-69DA0A0B4J2H0 117 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 M0QZ24 198 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 IGHV1-69P01742 117 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 MT-ND6P03923 174 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 NTF3P20783 257 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 CRIP1P50238 77 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 CCDC140Q96MF4 163 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 RABAC1Q9UI14 185 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 CREBBPQ92793 2442 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 SONP18583 2426 aaKnown RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 AVPP01185 164 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 TPPP2P59282 170 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 Q0VG73 95 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 LCNL1Q6ZST4 164 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 FAM110DQ8TAY7 271 aaPredicted RBP8.25□□□□□ -1.09
CUX1-221ENST00000622516 ZNF502Q8TBZ5 544 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 AAMDCQ9H7C9 122 aa8.25□□□□□ -1.09
CUX1-221ENST00000622516 MYO9AB2RTY4 2548 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 A0A1W2PS18 150 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 A8MWL6 223 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 SMAD7O15105 426 aaKnown RBP8.24□□□□□ -1.09
CUX1-221ENST00000622516 AMTP48728 403 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 PSG3Q16557 428 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 Q6ZS46 218 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 RNF182Q8N6D2 247 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 C18orf32Q8TCD1 76 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 VN1R17PQ8TDU5 208 aa8.24□□□□□ -1.09
CUX1-221ENST00000622516 H3BUX3 64 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 PTTG1IPP53801 180 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 KRTDAPP60985 99 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 BLCAPP62952 87 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 MRPL52Q86TS9 123 aaKnown RBP8.23□□□□□ -1.09
CUX1-221ENST00000622516 SIGLECL1Q8N7X8 197 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 ZNF48Q96MX3 618 aaPredicted RBP8.23□□□□□ -1.09
CUX1-221ENST00000622516 VGLL1Q99990 258 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 NAGKQ9UJ70 344 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 GPX1P07203 203 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 C1orf194Q5T5A4 169 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 HIF1ANQ9NWT6 349 aa8.23□□□□□ -1.09
CUX1-221ENST00000622516 K7EQM0 130 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 RPL7P18124 248 aaKnown RBP8.22□□□□□ -1.09
CUX1-221ENST00000622516 SCGB2A2Q13296 93 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 PMCHL1Q16048 86 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 BATFQ16520 125 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 TMEM75Q8N9X5 138 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 CHD6Q8TD26 2715 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 A0A1B0GXF2 115 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 PRAC2D3DTV9 90 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 CHEK1O14757 476 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 TRBV12-3P01733 135 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 IGHV3-11P01762 117 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 IGHG4P01861 327 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 HBBP68871 147 aa8.22□□□□□ -1.09
CUX1-221ENST00000622516 POLR3KQ9Y2Y1 108 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms