RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 OR4C13Q8NGP0 309 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 ZNF418Q8TF45 676 aaPredicted RBP8.59□□□□□ -1.03
UPF3A-212ENST00000619079 TPPP3Q9BW30 176 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 ZMAT4Q9H898 229 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 SPRR3Q9UBC9 169 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 NBASA2RRP1 2371 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 TRBV25-1A0A075B6N4 114 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 CECR9P0C854 216 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 ARPC1AQ92747 370 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 RITA1Q96K30 269 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 MRPL36Q9P0J6 103 aaKnown RBP8.58□□□□□ -1.04
UPF3A-212ENST00000619079 DKK2Q9UBU2 259 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 CYSLTR1Q9Y271 337 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 PRRG2O14669 202 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 LHBP01229 141 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 IGHV3-48P01763 117 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 EVI2AP22794 236 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 LCNL1Q6ZST4 164 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 ATP6V0E2Q8NHE4 81 aa8.58□□□□□ -1.04
UPF3A-212ENST00000619079 MRPL20Q9BYC9 149 aaKnown RBP8.58□□□□□ -1.04
UPF3A-212ENST00000619079 SLC25A39Q9BZJ4 359 aaPredicted RBP8.58□□□□□ -1.04
UPF3A-212ENST00000619079 DYSFO75923 2080 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 DNAJC13O75165 2243 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 E7EUB6 86 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 H3BMG7 143 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 H3BTX0 84 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 IGKCP01834 107 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 PVRIGQ6DKI7 326 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 LYPD1Q8N2G4 141 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 C18orf15Q96N68 181 aa8.57□□□□□ -1.04
UPF3A-212ENST00000619079 WI2-2373I1.2A0A1W2PRP0 233 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 CGB1A6NKQ9 187 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 CKS2P33552 79 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 ODF1Q14990 250 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 MRPL51Q4U2R6 128 aaKnown RBP8.56□□□□□ -1.04
UPF3A-212ENST00000619079 KLF17Q5JT82 389 aaPredicted RBP8.56□□□□□ -1.04
UPF3A-212ENST00000619079 SH2D6Q7Z4S9 175 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 MOGAT3Q86VF5 341 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 AMN1Q8IY45 258 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 PSG8Q9UQ74 426 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 HHLA3Q9XRX5 114 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 CFAP46Q8IYW2 2715 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 ZNF785A8K8V0 405 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 NPIPB5A8MRT5 1133 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 ATP5LO75964 103 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 TNFRSF1AP19438 455 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 KLRD1Q13241 179 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 TWIST1Q15672 202 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 ZNF562Q6V9R5 426 aa8.56□□□□□ -1.04
UPF3A-212ENST00000619079 IGKV2D-26A0A0A0MRZ7 120 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 LINC01546A6NGU7 62 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 OR11H12B2RN74 326 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 DPM2O94777 84 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 APOMO95445 188 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 IGLV1-44P01699 117 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 C5orf64Q2M2E5 130 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 C12orf74Q32Q52 190 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 VMA21Q3ZAQ7 101 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 LYZL1Q6UWQ5 148 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 C8orf86Q6ZUL3 223 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 EXOC3-AS1Q8N2X6 119 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 OR11H1Q8NG94 326 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 OR11H2Q8NH07 326 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 FAM57AQ8TBR7 257 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 MAP1LC3AQ9H492 121 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 PRO0461Q9UI25 63 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 GNLYP22749 145 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 RRN3P1Q2M238 152 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 C1QTNF4Q9BXJ3 329 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 VCX2Q9H322 139 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 ZNF462Q96JM2 2506 aa8.55□□□□□ -1.04
UPF3A-212ENST00000619079 A0A1B0GWB2 263 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 A0A1W2PPI3 338 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 TSPAN13O95857 204 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 PRSS1P07477 247 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 FCER1GP30273 86 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 C10orf55Q5SWW7 151 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 NXT2Q9NPJ8 142 aaKnown RBP8.54□□□□□ -1.04
UPF3A-212ENST00000619079 LINC00312Q9Y6C7 94 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 TRBV19A0A075B6N1 114 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 TMEM213A2RRL7 107 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 NPYP01303 97 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 LYZP61626 148 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 PLGLAQ15195 96 aa8.54□□□□□ -1.04
UPF3A-212ENST00000619079 SPINK8P0C7L1 97 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 GATA4P43694 442 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 FXYD7P58549 80 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 ATP5G2Q06055 141 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 FOXI1Q12951 378 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 RNF7Q9UBF6 113 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 ZGRF1Q86YA3 2104 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 DSCAML1Q8TD84 2053 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 IGHV1-18A0A0C4DH31 117 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 LINC01619G3V211 115 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 CRIP1P50238 77 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 ZC2HC1BQ5TFG8 222 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 FAM169BQ8N8A8 192 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 GAFA1Q96PS6 74 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 NGBQ9NPG2 151 aa8.53□□□□□ -1.04
UPF3A-212ENST00000619079 TANC2Q9HCD6 1990 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms