RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FOXI2Q6ZQN5 318 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 LYPD1Q8N2G4 141 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 ZNF738Q8NE65 137 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 SAV1Q9H4B6 383 aaPredicted RBP14.55□□□□□ -0.08
UPF3A-211ENST00000618700 TMEM167BQ9NRX6 74 aa14.55□□□□□ -0.08
UPF3A-211ENST00000618700 HLA-DRB4P13762 266 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 DEFB121Q5J5C9 76 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 EXOC3-AS1Q8N2X6 119 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 Q9H3A6 140 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 PRELID1Q9Y255 219 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 HLA-DRB4X5D2U9 266 aa14.54□□□□□ -0.08
UPF3A-211ENST00000618700 A0A0J9YX75 114 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 F6UB75 175 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 H3BMM0 161 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 H2AFB1P0C5Y9 115 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 ACTL10Q5JWF8 245 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 TRPT1Q86TN4 253 aaKnown RBP14.53□□□□□ -0.08
UPF3A-211ENST00000618700 SFT2D1Q8WV19 159 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 RPUSD4Q96CM3 377 aaKnown RBP14.53□□□□□ -0.08
UPF3A-211ENST00000618700 TMPRSS5Q9H3S3 457 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 AAMDCQ9H7C9 122 aa14.53□□□□□ -0.08
UPF3A-211ENST00000618700 A8MTW9 85 aa14.52□□□□□ -0.09
UPF3A-211ENST00000618700 ZNF705FA8MVS1 300 aaPredicted RBP14.52□□□□□ -0.09
UPF3A-211ENST00000618700 M0R3E3 92 aa14.52□□□□□ -0.09
UPF3A-211ENST00000618700 RANP62826 216 aaKnown RBP14.52□□□□□ -0.09
UPF3A-211ENST00000618700 ICAM4Q14773 271 aa14.52□□□□□ -0.09
UPF3A-211ENST00000618700 STHQ8IWL8 128 aa14.52□□□□□ -0.09
UPF3A-211ENST00000618700 IQCF2Q8IXL9 164 aa14.52□□□□□ -0.09
UPF3A-211ENST00000618700 AGRNO00468 2067 aa14.51□□□□□ -0.09
UPF3A-211ENST00000618700 LOC102724200A0A096LPH7 203 aaPredicted RBP14.51□□□□□ -0.09
UPF3A-211ENST00000618700 TRAV1-1A0A0B4J248 108 aa14.51□□□□□ -0.09
UPF3A-211ENST00000618700 PRAC2D3DTV9 90 aa14.51□□□□□ -0.09
UPF3A-211ENST00000618700 EBLN2Q6P2I7 272 aa14.51□□□□□ -0.09
UPF3A-211ENST00000618700 OTORQ9NRC9 128 aa14.51□□□□□ -0.09
UPF3A-211ENST00000618700 OR8A1Q8NGG7 326 aa14.5□□□□□ -0.09
UPF3A-211ENST00000618700 CLUHP3Q96NS8 147 aa14.5□□□□□ -0.09
UPF3A-211ENST00000618700 ZNF705EA8MWA4 302 aaPredicted RBP14.49□□□□□ -0.09
UPF3A-211ENST00000618700 GGTLC3B5MD39 225 aa14.49□□□□□ -0.09
UPF3A-211ENST00000618700 RPL35AP18077 110 aaKnown RBP14.49□□□□□ -0.09
UPF3A-211ENST00000618700 B9D2Q9BPU9 175 aa14.49□□□□□ -0.09
UPF3A-211ENST00000618700 DNAH9Q9NYC9 4486 aa14.49□□□□□ -0.09
UPF3A-211ENST00000618700 KIR2DL5BA0A0G2JN68 375 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 KIR2DL5BA0A0G2JPC4 375 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 A0A1W2PRE2 83 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 PGPA6NDG6 321 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 ZNF705DP0CH99 300 aaPredicted RBP14.48□□□□□ -0.09
UPF3A-211ENST00000618700 ZNF705BP0CI00 300 aaPredicted RBP14.48□□□□□ -0.09
UPF3A-211ENST00000618700 PRB4P10163 310 aaPredicted RBP14.48□□□□□ -0.09
UPF3A-211ENST00000618700 TEX261Q6UWH6 196 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 KIR2DL5AQ8N109 375 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 KIR2DL5BQ8NHK3 375 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 YTHDF2Q9Y5A9 579 aaKnown RBP14.48□□□□□ -0.09
UPF3A-211ENST00000618700 ARL2-SNX15V9GYD0 113 aa14.48□□□□□ -0.09
UPF3A-211ENST00000618700 A0A1B0GV50 99 aa14.47□□□□□ -0.09
UPF3A-211ENST00000618700 FAM74A7A6NL05 159 aa14.47□□□□□ -0.09
UPF3A-211ENST00000618700 DUSP14O95147 198 aaKnown RBP14.47□□□□□ -0.09
UPF3A-211ENST00000618700 CNN1P51911 297 aaKnown RBP14.47□□□□□ -0.09
UPF3A-211ENST00000618700 HAGHQ16775 308 aa14.47□□□□□ -0.09
UPF3A-211ENST00000618700 SBSPONQ8IVN8 264 aa14.47□□□□□ -0.09
UPF3A-211ENST00000618700 ARL6IP6Q8N6S5 226 aa14.47□□□□□ -0.09
UPF3A-211ENST00000618700 NPIPB6E9PJ23 425 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 HBE1P02100 147 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 APOC4P55056 127 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 UBE2G2P60604 165 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 HIST1H1AQ02539 215 aaPredicted RBP14.46□□□□□ -0.09
UPF3A-211ENST00000618700 AMTNQ6UX39 209 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 ZNF680Q8NEM1 530 aa14.46□□□□□ -0.09
UPF3A-211ENST00000618700 IGKV2-40A0A087WW87 121 aaPredicted RBP14.45□□□□□ -0.1
UPF3A-211ENST00000618700 IGKV2D-40P01614 121 aaPredicted RBP14.45□□□□□ -0.1
UPF3A-211ENST00000618700 IGKV3-20P01619 116 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 CSN1S1P47710 185 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 BLOC1S1P78537 153 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 CCL20P78556 96 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 C5orf17Q8NAS9 161 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 OR4B1Q8NGF8 309 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 OR10J6PQ8NGY7 276 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 RXFP4Q8TDU9 374 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 CSTL1Q9H114 145 aa14.45□□□□□ -0.1
UPF3A-211ENST00000618700 DIRC3C9JPN6 131 aa14.44□□□□□ -0.1
UPF3A-211ENST00000618700 TEX46H3BTG2 121 aa14.44□□□□□ -0.1
UPF3A-211ENST00000618700 GIG44P09565 113 aaPredicted RBP14.44□□□□□ -0.1
UPF3A-211ENST00000618700 PPT1P50897 306 aa14.44□□□□□ -0.1
UPF3A-211ENST00000618700 SUMO1P63165 101 aaKnown RBP14.44□□□□□ -0.1
UPF3A-211ENST00000618700 MORN3Q6PF18 240 aaPredicted RBP14.44□□□□□ -0.1
UPF3A-211ENST00000618700 LYPD6BQ8NI32 183 aa14.44□□□□□ -0.1
UPF3A-211ENST00000618700 CMTM2Q8TAZ6 248 aa14.44□□□□□ -0.1
UPF3A-211ENST00000618700 RBAKDNA6NC62 111 aa14.43□□□□□ -0.1
UPF3A-211ENST00000618700 UBE2CO00762 179 aa14.43□□□□□ -0.1
UPF3A-211ENST00000618700 SLC25A5P05141 298 aaKnown RBP14.43□□□□□ -0.1
UPF3A-211ENST00000618700 GNG5P63218 68 aa14.43□□□□□ -0.1
UPF3A-211ENST00000618700 NKX6-2Q9C056 277 aaPredicted RBP14.43□□□□□ -0.1
UPF3A-211ENST00000618700 PAGE4O60829 102 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 CA1P00915 261 aaPredicted RBP14.42□□□□□ -0.1
UPF3A-211ENST00000618700 IFNA7P01567 189 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 ERCC8Q13216 396 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 PMS2P11Q13670 270 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 C9orf47Q6ZRZ4 202 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 CCDC28AQ8IWP9 274 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 ODF3Q96PU9 254 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 ASCL2Q99929 193 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms