RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 H3BQ15 152 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 K7EMT4 169 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 PDE6DO43924 150 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 APOHP02749 345 aaPredicted RBP8.59□□□□□ -1.03
LINC00539-204ENST00000608957 NBEAP1P0C6P0 100 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 MUC7Q8TAX7 377 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 GRAMD2BQ96HH9 432 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 GPR82Q96P67 336 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 EDA2RQ9HAV5 297 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 ZNF586Q9NXT0 402 aa8.59□□□□□ -1.03
LINC00539-204ENST00000608957 TRBV19A0A075B6N1 114 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 IGHV3OR16-13A0A075B7E8 117 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 A0A087X0K7 114 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 IGHV3-74A0A0B4J1X5 117 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 IGHV7-4-1A0A0J9YVY3 117 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 A0A1W2PS18 150 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 TMEM250H0YL14 139 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 H3BTX0 84 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 SNRPCP09234 159 aaKnown RBP8.58□□□□□ -1.04
LINC00539-204ENST00000608957 ATF4P18848 351 aaPredicted RBP8.58□□□□□ -1.04
LINC00539-204ENST00000608957 GALR1P47211 349 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 CEBPGP53567 150 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 PDE6HQ13956 83 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 C16orf54Q6UWD8 224 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 CCDC28AQ8IWP9 274 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 GLMPQ8WWB7 406 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 SPATA25Q9BR10 227 aa8.58□□□□□ -1.04
LINC00539-204ENST00000608957 NKX6-2Q9C056 277 aaPredicted RBP8.58□□□□□ -1.04
LINC00539-204ENST00000608957 CARHSP1Q9Y2V2 147 aaKnown RBP8.58□□□□□ -1.04
LINC00539-204ENST00000608957 STARD9Q9P2P6 4700 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 SCO2A0A1W2PP80 73 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 C3orf84H3BNL1 204 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 BMI1P35226 326 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 RANP62826 216 aaKnown RBP8.57□□□□□ -1.04
LINC00539-204ENST00000608957 SOHLH1Q5JUK2 328 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 C10orf91Q5T1B1 145 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 FAM90A2PQ658T7 463 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 SIGLEC15Q6ZMC9 328 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 C11orf52Q96A22 123 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 FAM110AQ9BQ89 295 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 Q9H3A6 140 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 NBEAL2Q6ZNJ1 2754 aa8.57□□□□□ -1.04
LINC00539-204ENST00000608957 DYNC2H1Q8NCM8 4307 aaKnown RBP8.57□□□□□ -1.04
LINC00539-204ENST00000608957 TRAV25A0A0B4J276 109 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 SLC17A3O00476 420 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 ZNF253O75346 499 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 NDUFB4O95168 129 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 SUMO1P63165 101 aaKnown RBP8.56□□□□□ -1.04
LINC00539-204ENST00000608957 CASC10Q5T4H9 136 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 RPUSD4Q96CM3 377 aaKnown RBP8.56□□□□□ -1.04
LINC00539-204ENST00000608957 TCEAL7Q9BRU2 100 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 OTORQ9NRC9 128 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 SMPXQ9UHP9 88 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 AGRNO00468 2067 aa8.56□□□□□ -1.04
LINC00539-204ENST00000608957 LYSTQ99698 3801 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 CHEK1O14757 476 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 TSPAN4O14817 238 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 APOC3P02656 99 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 MEOX2P50222 304 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 PSG9Q00887 426 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 ODF3L2Q3SX64 289 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 RBPMS2Q6ZRY4 209 aaKnown RBP8.55□□□□□ -1.04
LINC00539-204ENST00000608957 LYPD1Q8N2G4 141 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 C5orf17Q8NAS9 161 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 C17orf77Q96MU5 243 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 RHPN1-AS1Q9BWJ2 59 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 PARLQ9H300 379 aa8.55□□□□□ -1.04
LINC00539-204ENST00000608957 PGPA6NDG6 321 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 HELTA6NFD8 242 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 ZNF727A8MUV8 499 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 PEX7O00628 323 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 SLC25A5P05141 298 aaKnown RBP8.54□□□□□ -1.04
LINC00539-204ENST00000608957 ZNF674Q2M3X9 581 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 FAM74A3Q4VXF1 159 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 ZFAND6Q6FIF0 208 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 EXOC3-AS1Q8N2X6 119 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 SVBPQ8N300 66 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 SPAG8Q99932 426 aaPredicted RBP8.54□□□□□ -1.04
LINC00539-204ENST00000608957 SMIM7Q9BQ49 75 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 SLC50A1Q9BRV3 221 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 NIPSNAP3BQ9BS92 247 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 AAMDCQ9H7C9 122 aa8.54□□□□□ -1.04
LINC00539-204ENST00000608957 RYR3Q15413 4870 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 AKR1C3P42330 323 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 GNG5P63218 68 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 CMTM2Q8TAZ6 248 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 C2CD4CQ8TF44 421 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 HIST1H2BAQ96A08 127 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 DERL1Q9BUN8 251 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 ZNF331Q9NQX6 463 aaPredicted RBP8.53□□□□□ -1.04
LINC00539-204ENST00000608957 EPDR1Q9UM22 224 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 RPH3ALQ9UNE2 315 aa8.53□□□□□ -1.04
LINC00539-204ENST00000608957 TENM2Q9NT68 2774 aa8.52□□□□□ -1.05
LINC00539-204ENST00000608957 ZNF124Q15973 351 aa8.52□□□□□ -1.05
LINC00539-204ENST00000608957 TCF24Q7RTU0 167 aa8.52□□□□□ -1.05
LINC00539-204ENST00000608957 ATG101Q9BSB4 218 aa8.52□□□□□ -1.05
LINC00539-204ENST00000608957 NAT8Q9UHE5 227 aa8.52□□□□□ -1.05
LINC00539-204ENST00000608957 LOC102724200A0A096LPH7 203 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms