RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LINC01587Q99440 93 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 RSG1Q9BU20 258 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 NMES1Q9C002 83 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 HSPB11Q9Y547 144 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 ZNF98A6NK75 572 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 ZNF705GA8MUZ8 300 aaPredicted RBP4.4□□□□□ -1.71
CUX1-220ENST00000607092 G3V3Q6 166 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 K7EP13 123 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 NXPH3O95157 252 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 IFNA7P01567 189 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 SLC25A6P12236 298 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 S100A1P23297 94 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 CDKN1BP46527 198 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 H2BFSP57053 126 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 ERVFC1-1P60608 527 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 ZNF90Q03938 601 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 NFE4Q86UQ8 179 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 LRTM2Q8N967 370 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 ZNF738Q8NE65 137 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 OR11H4Q8NGC9 324 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 LHFPL5Q8TAF8 219 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 RXFP4Q8TDU9 374 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 TMEM170AQ8WVE7 144 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 FRZBQ92765 325 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 SLC25A22Q9H936 323 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 LINC00588Q9Y4M8 146 aa4.4□□□□□ -1.71
CUX1-220ENST00000607092 TRAV9-2A0A087WT02 112 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 SNURFLB1AK76 121 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 F6UB75 175 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 L7N2F9 121 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 GOSR2O14653 212 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 IFNA5P01569 189 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 RLN2P04090 185 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 INAFM2P0DMQ5 153 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 ORM2P19652 201 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 CXCL2P19875 107 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 S100A11P31949 105 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 IL15RAQ13261 267 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 OR5I1Q13606 314 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 OR2F1Q13607 317 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 ZNF345Q14585 488 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 OPCMLQ14982 345 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 SPINK13Q1W4C9 94 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 Q5BKY6 102 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 PXDC1Q5TGL8 231 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 TEX261Q6UWH6 196 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 ZNF546Q86UE3 836 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 OR8A1Q8NGG7 326 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 THAP6Q8TBB0 222 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 C2orf50Q96LR7 162 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 FAM210AQ96ND0 272 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 SLC25A32Q9H2D1 315 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 RBKSQ9H477 322 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 PLA2G2DQ9UNK4 145 aa4.39□□□□□ -1.71
CUX1-220ENST00000607092 MRPS16Q9Y3D3 137 aaKnown RBP4.39□□□□□ -1.71
CUX1-220ENST00000607092 IGKV1D-37A0A075B6S9 117 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 TRAV26-1A0A087WT03 109 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 C5orf51A6NDU8 294 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 SMLR1H3BR10 107 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 M0R2Z0 102 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 CRXO43186 299 aaPredicted RBP4.38□□□□□ -1.71
CUX1-220ENST00000607092 HYPMO75409 117 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 SIX6O95475 246 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 PET100P0DJ07 73 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 DEFB1P60022 68 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 HIST1H1AQ02539 215 aaPredicted RBP4.38□□□□□ -1.71
CUX1-220ENST00000607092 AKR1C1Q04828 323 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 SLAQ13239 276 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 PSG3Q16557 428 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 LCN15Q6UWW0 184 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 ACOT7LQ6ZUV0 252 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 TMUB2Q71RG4 321 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 SLC51BQ86UW2 128 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 KCNRGQ8N5I3 272 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 INO80EQ8NBZ0 244 aaPredicted RBP4.38□□□□□ -1.71
CUX1-220ENST00000607092 ZNF680Q8NEM1 530 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 SLC50A1Q9BRV3 221 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 NOP10Q9NPE3 64 aaKnown RBP4.38□□□□□ -1.71
CUX1-220ENST00000607092 HIGD1AQ9Y241 93 aa4.38□□□□□ -1.71
CUX1-220ENST00000607092 A0A087X0K7 114 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 TAAR5O14804 337 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 ATP6V1G1O75348 118 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 MPC2O95563 127 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 HTN1P15515 57 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 RAB14P61106 215 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 POLR2GP62487 172 aaKnown RBP eCLIP4.37□□□□□ -1.71
CUX1-220ENST00000607092 EIF5AP63241 154 aaKnown RBP4.37□□□□□ -1.71
CUX1-220ENST00000607092 LYZL2Q7Z4W2 148 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 BAP18Q8IXM2 172 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 RNASE8Q8TDE3 154 aaKnown RBP4.37□□□□□ -1.71
CUX1-220ENST00000607092 PPP1R1CQ8WVI7 109 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 RPUSD4Q96CM3 377 aaKnown RBP4.37□□□□□ -1.71
CUX1-220ENST00000607092 C20orf173Q96LM9 149 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 SHANK2-AS3Q9BTD1 123 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 TNFSF18Q9UNG2 199 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 STRAPQ9Y3F4 350 aaKnown RBP4.37□□□□□ -1.71
CUX1-220ENST00000607092 FLG2Q5D862 2391 aaPredicted RBP4.37□□□□□ -1.71
CUX1-220ENST00000607092 MYCBP2O75592 4640 aa4.37□□□□□ -1.71
CUX1-220ENST00000607092 VPS13BQ7Z7G8 4022 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms