RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 PROP1O75360 226 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 GCGP01275 180 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 MT-ND6P03923 174 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 CLEC3BP05452 202 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 CRYGBP07316 175 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 NPY1RP25929 384 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 GPX4P36969 197 aaPredicted RBP3.87□□□□□ -1.79
VRK3-226ENST00000602029 TAS2R45P59539 299 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 NANOS2P60321 138 aaKnown RBP3.87□□□□□ -1.79
VRK3-226ENST00000602029 RPL23P62829 140 aaKnown RBP3.87□□□□□ -1.79
VRK3-226ENST00000602029 SSBP2P81877 361 aaPredicted RBP3.87□□□□□ -1.79
VRK3-226ENST00000602029 ADIRFQ15847 76 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 C2orf83Q53S99 150 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 Q56UQ5 140 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 LINC00322Q6ZN03 302 aaPredicted RBP3.87□□□□□ -1.79
VRK3-226ENST00000602029 PQLC2Q6ZP29 291 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 Q6ZWC4 215 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 ZFP82Q8N141 532 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 HIST3H2BBQ8N257 126 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 TTC9CQ8N5M4 171 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 SLC24A4Q8NFF2 622 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 C11orf45Q8TAV5 145 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 TMEM170AQ8WVE7 144 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 RNF183Q96D59 192 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 GPHA2Q96T91 129 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 COMMD5Q9GZQ3 224 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 TMEM140Q9NV12 185 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 PGPEP1Q9NXJ5 209 aa3.87□□□□□ -1.79
VRK3-226ENST00000602029 IGHV3-49A0A0A0MS15 119 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TRBV7-1A0A0A6YYK4 115 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TRAV25A0A0B4J276 109 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 A0A1B0GV50 99 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 A0A1W2PRE2 83 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 OR2T8A6NH00 312 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 NPIPB5A8MRT5 1133 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TSTD3H0UI37 97 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 CORTO00230 105 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PHOX2AO14813 284 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 NXPH3O95157 252 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 CXCL1P09341 107 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 OR10J4P0C629 311 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 FCGR2BP31994 310 aaPredicted RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 AKR1C3P42330 323 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 GALR1P47211 349 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 CEBPGP53567 150 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 SUB1P53999 127 aaKnown RBP eCLIP3.86□□□□□ -1.79
VRK3-226ENST00000602029 ELLP55199 621 aaPredicted RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 SELENOTP62341 195 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 RPL8P62917 257 aaKnown RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 PRR20EP86478 221 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PRR20CP86479 221 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PRR20DP86480 221 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PRR20BP86481 221 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PRR20AP86496 221 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 IZUMO4Q1ZYL8 232 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 ACTL10Q5JWF8 245 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 LGALS9CQ6DKI2 356 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 RASL11AQ6T310 242 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 UNQ9165/PRO28630Q6UXU0 137 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 SSX7Q7RTT5 188 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TMEM144Q7Z5S9 345 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 MRPL52Q86TS9 123 aaKnown RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 LINC01551Q86U37 167 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 GPHB5Q86YW7 130 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 WFDC3Q8IUB2 231 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 APRG1Q8IVJ8 170 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 GBGT1Q8N5D6 347 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 STXBP6Q8NFX7 210 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 OR11H2Q8NH07 326 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 GATAD1Q8WUU5 269 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TMEM18Q96B42 140 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 CCDC140Q96MF4 163 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PFDN5Q99471 154 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 SPAG8Q99932 426 aaPredicted RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 CHRDL1Q9BU40 450 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 QTRT1Q9BXR0 403 aaKnown RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 VSIRQ9H7M9 311 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 SLC25A22Q9H936 323 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 NIT2Q9NQR4 276 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 GSN-AS1Q9NRJ2 163 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 MRPL27Q9P0M9 148 aaKnown RBP3.86□□□□□ -1.79
VRK3-226ENST00000602029 SLC45A2Q9UMX9 530 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 TP53TG1Q9Y2A0 90 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PXMP4Q9Y6I8 212 aa3.86□□□□□ -1.79
VRK3-226ENST00000602029 PKD1P98161 4303 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 IGHV3OR16-13A0A075B7E8 117 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 IGHV3-74A0A0B4J1X5 117 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 A8MWP6 167 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 TEX22C9J3V5 150 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 UPK2O00526 184 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 PAGE4O60829 102 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 CA1P00915 261 aaPredicted RBP3.85□□□□□ -1.79
VRK3-226ENST00000602029 TRGC2P03986 189 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 TRGC1P0CF51 173 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 FGF8P55075 233 aaPredicted RBP3.85□□□□□ -1.79
VRK3-226ENST00000602029 YPEL3P61236 119 aaPredicted RBP3.85□□□□□ -1.79
VRK3-226ENST00000602029 PAFAH1B2P68402 229 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 ETFRF1Q6IPR1 90 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 WDR73Q6P4I2 378 aa3.85□□□□□ -1.79
VRK3-226ENST00000602029 ZNF114Q8NC26 417 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms