RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 INSP01308 110 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 M6PRP20645 277 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 TAS2R45P59539 299 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 KHDC3LQ587J8 217 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 C1orf158Q8N1D5 194 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 HSD17B11Q8NBQ5 300 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 RNF141Q8WVD5 230 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 FXYD5Q96DB9 178 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 AAMDCQ9H7C9 122 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 CSMD3Q7Z407 3707 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 CRXO43186 299 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-215ENST00000601150 OR10J4P0C629 311 aa12.15□□□□□ -0.46
TRIM28-215ENST00000601150 NANOS2P60321 138 aaKnown RBP12.15□□□□□ -0.46
TRIM28-215ENST00000601150 CEMP1Q6PRD7 247 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-215ENST00000601150 OR2G3Q8NGZ4 309 aa12.15□□□□□ -0.46
TRIM28-215ENST00000601150 PSMG3Q9BT73 122 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-215ENST00000601150 TMEM208Q9BTX3 173 aa12.15□□□□□ -0.46
TRIM28-215ENST00000601150 BORCS7-ASMTA0A0B4J1R7 106 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 A0A1W2PPV4 95 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 M0R3E3 92 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 ATP6V0CP27449 155 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 RAB2AP61019 212 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 UBE2L3P68036 154 aaKnown RBP12.14□□□□□ -0.47
TRIM28-215ENST00000601150 ICAM4Q14773 271 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 BAP18Q8IXM2 172 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 EXOC3-AS1Q8N2X6 119 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 PHLDA1Q8WV24 401 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-215ENST00000601150 ZNF503Q96F45 646 aa12.14□□□□□ -0.47
TRIM28-215ENST00000601150 TRAV12-2A0A075B6T6 113 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 TMEM189A5PLL7 270 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 NPIPB6E9PJ23 425 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 ARPC5O15511 151 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 HBE1P02100 147 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 TSPOP30536 169 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 CDKN1BP46527 198 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 RPL7L1Q6DKI1 246 aaKnown RBP12.13□□□□□ -0.47
TRIM28-215ENST00000601150 FAM122CQ6P4D5 195 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 OR10G4Q8NGN3 311 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 OR10G9Q8NGN4 311 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 OR10G7Q8NGN6 311 aa12.13□□□□□ -0.47
TRIM28-215ENST00000601150 KLK5Q9Y337 293 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-215ENST00000601150 SMLR1H3BR10 107 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 SERF2P84101 59 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 RRN3P1Q2M238 152 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 RPP25LQ8N5L8 163 aaKnown RBP12.12□□□□□ -0.47
TRIM28-215ENST00000601150 GNPNAT1Q96EK6 184 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-215ENST00000601150 PHYHIPLQ96FC7 376 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 ODF3Q96PU9 254 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 SH3BGRL3Q9H299 93 aa12.12□□□□□ -0.47
TRIM28-215ENST00000601150 TAAR5O14804 337 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 MBP02144 154 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 CT45A10P0DMU9 189 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 PQLC2Q6ZP29 291 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 LYPD1Q8N2G4 141 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 TMEM256Q8N2U0 113 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 STARD9Q9P2P6 4700 aa12.11□□□□□ -0.47
TRIM28-215ENST00000601150 LCE6AA0A183 80 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 LOC102723971A0A1B0GUV8 181 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 EIF3GO75821 320 aaKnown RBP eCLIP12.1□□□□□ -0.47
TRIM28-215ENST00000601150 LEPP41159 167 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 CDC34P49427 236 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-215ENST00000601150 EMP1P54849 157 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 RANP62826 216 aaKnown RBP12.1□□□□□ -0.47
TRIM28-215ENST00000601150 LINC00477Q96M19 166 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 CELA1Q9UNI1 258 aa12.1□□□□□ -0.47
TRIM28-215ENST00000601150 KMT2CQ8NEZ4 4911 aaKnown RBP12.1□□□□□ -0.47
TRIM28-215ENST00000601150 JTBO76095 146 aa12.09□□□□□ -0.47
TRIM28-215ENST00000601150 ERCC8Q13216 396 aa12.09□□□□□ -0.47
TRIM28-215ENST00000601150 C20orf144Q9BQM9 153 aa12.09□□□□□ -0.47
TRIM28-215ENST00000601150 Q9H3A6 140 aa12.09□□□□□ -0.47
TRIM28-215ENST00000601150 IGKV2-40A0A087WW87 121 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-215ENST00000601150 ZNF705GA8MUZ8 300 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-215ENST00000601150 C11orf94C9JXX5 98 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 HMGB3O15347 200 aaKnown RBP12.08□□□□□ -0.48
TRIM28-215ENST00000601150 IGKV2D-40P01614 121 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-215ENST00000601150 SPART-AS1P0CW21 52 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 CSN1S1P47710 185 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 GFI1BQ5VTD9 330 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 C9orf47Q6ZRZ4 202 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 Q6ZTC4 211 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 LINC01587Q99440 93 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 AGPAT4-IT1Q9H0P7 198 aa12.08□□□□□ -0.48
TRIM28-215ENST00000601150 TEX48A0A1B0GUV7 120 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 HMSDA8MTL9 139 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 ARL14EPLP0DKL9 152 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 TAS2R60P59551 318 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 ZNF345Q14585 488 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 KIR3DS1Q14943 382 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 C12orf74Q32Q52 190 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 TMEM78Q5T7P6 136 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 KCNRGQ8N5I3 272 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 RAB24Q969Q5 203 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 ACTR3CQ9C0K3 210 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-215ENST00000601150 CYTL1Q9NRR1 136 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 DKK2Q9UBU2 259 aa12.07□□□□□ -0.48
TRIM28-215ENST00000601150 YTHDF2Q9Y5A9 579 aaKnown RBP12.07□□□□□ -0.48
TRIM28-215ENST00000601150 TRAV10A0A0B4J240 114 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 H7BYZ3 331 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 STAG3L2P0CL84 134 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 STAG3L3P0CL85 134 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms