RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 LINC00574Q9H8X3 128 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 MSRB1Q9NZV6 116 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 ARHGAP32A7KAX9 2087 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 H3BRM9 83 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 FOXC1Q12948 553 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 UFSP1Q6NVU6 142 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 SIGLEC9Q9Y336 463 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 SVEP1Q4LDE5 3571 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 RPS20P60866 119 aaKnown RBP14.47□□□□□ -0.09
UPF1-210ENST00000600689 MRPL51Q4U2R6 128 aaKnown RBP14.47□□□□□ -0.09
UPF1-210ENST00000600689 JKAMPQ9P055 326 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 TRBV19A0A075B6N1 114 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 NPIPB5A8MRT5 1133 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 C17orf100A8MU93 164 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 IGKV1-17P01599 117 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 S100A7AQ86SG5 101 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 K7EQM0 130 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 TEX36Q5VZQ5 186 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 PPP1R27Q86WC6 154 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 ORMDL3Q8N138 153 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 GTSF1LQ9H1H1 148 aa14.46□□□□□ -0.09
UPF1-210ENST00000600689 PRSS1P07477 247 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 IGKV2D-26A0A0A0MRZ7 120 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 G3V4G9 280 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 LOXP28300 417 aaPredicted RBP14.45□□□□□ -0.1
UPF1-210ENST00000600689 FXYD2P54710 66 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 PSG3Q16557 428 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 BOD1L2Q8IYS8 172 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 SCNM1Q9BWG6 230 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 DCHS2Q6V1P9 2916 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 HBDP02042 147 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 IGHV1-8P0DP01 117 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 APOBEC3AP31941 199 aaPredicted RBP14.45□□□□□ -0.1
UPF1-210ENST00000600689 HSD52Q0P140 79 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 ADIPOQQ15848 244 aa14.45□□□□□ -0.1
UPF1-210ENST00000600689 PRRG2O14669 202 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 SH2D1AO60880 128 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 GATA1P15976 413 aaPredicted RBP14.44□□□□□ -0.1
UPF1-210ENST00000600689 HLA-DMBP28068 263 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 MC5RP33032 325 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 SIGLEC15Q6ZMC9 328 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 A0A1W2PPM0 123 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 INS-IGF2F8WCM5 200 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 TMEM11P17152 192 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 FCER1GP30273 86 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 GTSCR1Q86UQ5 136 aa14.44□□□□□ -0.1
UPF1-210ENST00000600689 FABP2P12104 132 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 LGALS7P47929 136 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 BSPH1Q075Z2 132 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 FAM104BQ5XKR9 115 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 DYNLRB1Q9NP97 96 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 NHP2Q9NX24 153 aaKnown RBP14.43□□□□□ -0.1
UPF1-210ENST00000600689 TEX48A0A1B0GUV7 120 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 TMEM178BH3BS89 294 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 NDUFS7O75251 213 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 SMAGPQ0VAQ4 97 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 SAMD5Q5TGI4 173 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 GFRALQ6UXV0 394 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 C16orf97H3BN30 126 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 ADAMTSL5Q6ZMM2 481 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 LCNL1Q6ZST4 164 aa14.43□□□□□ -0.1
UPF1-210ENST00000600689 PTPRQQ9UMZ3 2332 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 TEX22C9J3V5 150 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 ORM1P02763 201 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 THBDP07204 575 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 C3orf36Q3SXR2 165 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 TMEM108Q6UXF1 575 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 NPFFR1Q9GZQ6 430 aa14.42□□□□□ -0.1
UPF1-210ENST00000600689 RNF125Q96EQ8 232 aa14.41□□□□□ -0.1
UPF1-210ENST00000600689 IGF2RP11717 2491 aa14.41□□□□□ -0.1
UPF1-210ENST00000600689 PPIAL4CA0A0B4J2A2 164 aa14.41□□□□□ -0.1
UPF1-210ENST00000600689 PPIAL4GP0DN37 164 aa14.41□□□□□ -0.1
UPF1-210ENST00000600689 RPEQ96AT9 228 aa14.41□□□□□ -0.1
UPF1-210ENST00000600689 LEPP41159 167 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 LGALS9BQ3B8N2 356 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 LGALS9CQ6DKI2 356 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 AAMDCQ9H7C9 122 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 SPTA1P02549 2419 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 SPTBN1Q01082 2364 aaKnown RBP14.4□□□□□ -0.1
UPF1-210ENST00000600689 IGHV1-3A0A0C4DH29 117 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 EGR2P11161 476 aaPredicted RBP14.4□□□□□ -0.1
UPF1-210ENST00000600689 TMEM30BQ3MIR4 351 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 CLEC2AQ6UVW9 174 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 SHANK2-AS3Q9BTD1 123 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 I3L2K1 104 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 SMIM13P0DJ93 91 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 HES1Q14469 280 aa14.4□□□□□ -0.1
UPF1-210ENST00000600689 FOXC2Q99958 501 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 TMEM160Q9NX00 188 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 IGHV3OR16-13A0A075B7E8 117 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 IGHV3-74A0A0B4J1X5 117 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 ZNF80P51504 273 aaPredicted RBP14.39□□□□□ -0.11
UPF1-210ENST00000600689 AMTNQ6UX39 209 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 ZNF491Q8N8L2 437 aa14.39□□□□□ -0.11
UPF1-210ENST00000600689 NUP37Q8NFH4 326 aa14.38□□□□□ -0.11
UPF1-210ENST00000600689 VGLL1Q99990 258 aa14.38□□□□□ -0.11
UPF1-210ENST00000600689 TMEM155Q4W5P6 130 aa14.38□□□□□ -0.11
UPF1-210ENST00000600689 SAMD13Q5VXD3 122 aa14.38□□□□□ -0.11
UPF1-210ENST00000600689 C16orf54Q6UWD8 224 aa14.38□□□□□ -0.11
UPF1-210ENST00000600689 OR9G4Q8NGQ1 327 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms