RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 A0A1W2PRE2 83 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 CSN3P07498 182 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 SRP19P09132 144 aaKnown RBP9.48□□□□□ -0.89
UPF1-208ENST00000600012 CBLN1P23435 193 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 TAGLN2P37802 199 aaKnown RBP9.48□□□□□ -0.89
UPF1-208ENST00000600012 CEBPGP53567 150 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 RANP62826 216 aaKnown RBP9.48□□□□□ -0.89
UPF1-208ENST00000600012 TCF24Q7RTU0 167 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 EXOC3-AS1Q8N2X6 119 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 Q9H3A6 140 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 ARL2-SNX15V9GYD0 113 aa9.48□□□□□ -0.89
UPF1-208ENST00000600012 PRB4P10163 310 aaPredicted RBP9.47□□□□□ -0.89
UPF1-208ENST00000600012 BMI1P35226 326 aa9.47□□□□□ -0.89
UPF1-208ENST00000600012 SUMO1P63165 101 aaKnown RBP9.47□□□□□ -0.89
UPF1-208ENST00000600012 IGFL4Q6B9Z1 124 aa9.47□□□□□ -0.89
UPF1-208ENST00000600012 CYB561D1Q8N8Q1 229 aa9.47□□□□□ -0.89
UPF1-208ENST00000600012 MLXQ9UH92 298 aa9.47□□□□□ -0.89
UPF1-208ENST00000600012 STARD9Q9P2P6 4700 aa9.47□□□□□ -0.89
UPF1-208ENST00000600012 LYSTQ99698 3801 aa9.46□□□□□ -0.89
UPF1-208ENST00000600012 SCO2A0A1W2PP80 73 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 PGPA6NDG6 321 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 HELTA6NFD8 242 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 SFTA3P0C7M3 94 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 HLA-DMBP28068 263 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 RPL11P62913 178 aaKnown RBP9.46□□□□□ -0.9
UPF1-208ENST00000600012 GNG5P63218 68 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 GTSCR1Q86UQ5 136 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 DYNLRB2Q8TF09 96 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 RPH3ALQ9UNE2 315 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 CSMD3Q7Z407 3707 aa9.46□□□□□ -0.9
UPF1-208ENST00000600012 BIRC6Q9NR09 4857 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 TMEM218A2RU14 115 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 F6UZH7 168 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 SLC25A5P05141 298 aaKnown RBP9.45□□□□□ -0.9
UPF1-208ENST00000600012 ADCYAP1P18509 176 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 PDE6HQ13956 83 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 FAM90A2PQ658T7 463 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 LCN12Q6JVE5 192 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 CCDC28AQ8IWP9 274 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 GBGT1Q8N5D6 347 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 LINC00052Q96N35 136 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 TXNDC17Q9BRA2 123 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 SLC35B3Q9H1N7 401 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 SMDT1Q9H4I9 107 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 TUBA4BQ9H853 241 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 ZNF331Q9NQX6 463 aaPredicted RBP9.45□□□□□ -0.9
UPF1-208ENST00000600012 OTORQ9NRC9 128 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 SIGLEC8Q9NYZ4 499 aa9.45□□□□□ -0.9
UPF1-208ENST00000600012 TRAV8-2A0A0B4J237 113 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 M0R3E3 92 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 PDE6DO43924 150 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 ZNF253O75346 499 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 TFPI2P48307 235 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 PSG9Q00887 426 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 WFDC3Q8IUB2 231 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 RNF182Q8N6D2 247 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 RPUSD4Q96CM3 377 aaKnown RBP9.44□□□□□ -0.9
UPF1-208ENST00000600012 C16orf92Q96LL3 132 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 SLC50A1Q9BRV3 221 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 AAMDCQ9H7C9 122 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 NRN1Q9NPD7 142 aa9.44□□□□□ -0.9
UPF1-208ENST00000600012 EPPK1P58107 5090 aaKnown RBP9.43□□□□□ -0.9
UPF1-208ENST00000600012 F8W036 122 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 TMEM250H0YL14 139 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 PEX7O00628 323 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 SOCS3O14543 225 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 MEOX2P50222 304 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 ZNF674Q2M3X9 581 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 LYPD1Q8N2G4 141 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 C5orf17Q8NAS9 161 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 IL17DQ8TAD2 202 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 CMTM2Q8TAZ6 248 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 C11orf52Q96A22 123 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 DERL1Q9BUN8 251 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 NKX6-2Q9C056 277 aaPredicted RBP9.43□□□□□ -0.9
UPF1-208ENST00000600012 MS4A6AQ9H2W1 248 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 PARLQ9H300 379 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 EPDR1Q9UM22 224 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 DNAH1Q9P2D7 4330 aa9.43□□□□□ -0.9
UPF1-208ENST00000600012 DEFB114Q30KQ6 69 aa9.42□□□□□ -0.9
UPF1-208ENST00000600012 TMEM61Q8N0U2 210 aa9.42□□□□□ -0.9
UPF1-208ENST00000600012 OR2K2Q8NGT1 345 aa9.42□□□□□ -0.9
UPF1-208ENST00000600012 C20orf173Q96LM9 149 aa9.42□□□□□ -0.9
UPF1-208ENST00000600012 ZNF705FA8MVS1 300 aaPredicted RBP9.41□□□□□ -0.9
UPF1-208ENST00000600012 NDUFS6O75380 124 aaKnown RBP9.41□□□□□ -0.9
UPF1-208ENST00000600012 TCRAP04437 139 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 AKR1C3P42330 323 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 CD300EQ496F6 205 aaPredicted RBP9.41□□□□□ -0.9
UPF1-208ENST00000600012 SOHLH1Q5JUK2 328 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 FAM24BQ8N5W8 94 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 C2CD4CQ8TF44 421 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 DCANP1Q8TF63 244 aa9.41□□□□□ -0.9
UPF1-208ENST00000600012 IGKV2-40A0A087WW87 121 aaPredicted RBP9.4□□□□□ -0.9
UPF1-208ENST00000600012 TRAV34A0A0B4J273 112 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 IZUMO1RA6ND01 250 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 ZNF727A8MUV8 499 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 KRBOX1C9JBD0 128 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 DIRC3C9JPN6 131 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 PRAC2D3DTV9 90 aa9.4□□□□□ -0.9
UPF1-208ENST00000600012 K7EQG2 157 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms