RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ARL14EPLP0DKL9 152 aa12.18□□□□□ -0.46
SHKBP1-219ENST00000599575 RPL35AP18077 110 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-219ENST00000599575 OR8A1Q8NGG7 326 aa12.18□□□□□ -0.46
SHKBP1-219ENST00000599575 RXFP4Q8TDU9 374 aa12.18□□□□□ -0.46
SHKBP1-219ENST00000599575 TMED6Q8WW62 240 aa12.18□□□□□ -0.46
SHKBP1-219ENST00000599575 H3BTX0 84 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 AMBPP02760 352 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 SNRPCP09234 159 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 GCHFRP30047 84 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 CSN1S1P47710 185 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 IGFL4Q6B9Z1 124 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 OR10J6PQ8NGY7 276 aa12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 NKX6-2Q9C056 277 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-219ENST00000599575 RANP62826 216 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-219ENST00000599575 ZNF726P1Q15940 193 aa12.16□□□□□ -0.46
SHKBP1-219ENST00000599575 MBD3L1Q8WWY6 194 aa12.16□□□□□ -0.46
SHKBP1-219ENST00000599575 OTORQ9NRC9 128 aa12.16□□□□□ -0.46
SHKBP1-219ENST00000599575 MAP1LC3B2A6NCE7 125 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 HMGB3O15347 200 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 CA1P00915 261 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 CNN1P51911 297 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 ICAM4Q14773 271 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 GDF5OSQ5U4N7 250 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 OR4B1Q8NGF8 309 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 ASCL2Q99929 193 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 MAP1LC3BQ9GZQ8 125 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 Q9H3A6 140 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 ARL2-SNX15V9GYD0 113 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 TGP01266 2768 aa12.15□□□□□ -0.46
SHKBP1-219ENST00000599575 A0A1W2PRE2 83 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 RBAKDNA6NC62 111 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 F6UB75 175 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 TEX46H3BTG2 121 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 SLC25A5P05141 298 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 HLA-DMBP28068 263 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 SULT1A2P50226 295 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 EXOC3-AS1Q8N2X6 119 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 CMTM2Q8TAZ6 248 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 FAM213BQ8TBF2 198 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 RNF183Q96D59 192 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 RCHY1Q96PM5 261 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 ODF3Q96PU9 254 aa12.14□□□□□ -0.47
SHKBP1-219ENST00000599575 NBEAL2Q6ZNJ1 2754 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 COL7A1Q02388 2944 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 TRAV1-1A0A0B4J248 108 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 SERTM2A0A1B0GWG4 89 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 NPIPB6E9PJ23 425 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 H2AFB1P0C5Y9 115 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 PPT1P50897 306 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 HIST1H1AQ02539 215 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 SSX7Q7RTT5 188 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 LINC00477Q96M19 166 aa12.13□□□□□ -0.47
SHKBP1-219ENST00000599575 TRBV7-9A0A0J9YWB2 115 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 ZNF705FA8MVS1 300 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 M0R3E3 92 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 SPRY2O43597 315 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 TSPOP30536 169 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 FHITP49789 147 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 AMTNQ6UX39 209 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 C9orf47Q6ZRZ4 202 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 SFT2D1Q8WV19 159 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 TCEAL7Q9BRU2 100 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 PPP1R14DQ9NXH3 145 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 PLA2G2EQ9NZK7 142 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 U3KQK5 164 aa12.12□□□□□ -0.47
SHKBP1-219ENST00000599575 PGPA6NDG6 321 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 EIF3GO75821 320 aaKnown RBP eCLIP12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 HBE1P02100 147 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 NMBP08949 121 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 GIG44P09565 113 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 NKX2-5P52952 324 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 DEFB1P60022 68 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 IQCF2Q8IXL9 164 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 C5orf17Q8NAS9 161 aa12.11□□□□□ -0.47
SHKBP1-219ENST00000599575 FBLL1A6NHQ2 334 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 PRAC2D3DTV9 90 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 BOLA2-SMG1P6H3BVE0 249 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 IGKV3-20P01619 116 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 DEFB135Q30KP9 77 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 TMEM78Q5T7P6 136 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 CSNK1G2-AS1Q8NCQ2 148 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 OVOL2Q9BRP0 275 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 LENEPQ9Y5L5 61 aa12.1□□□□□ -0.47
SHKBP1-219ENST00000599575 DIRC3C9JPN6 131 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 K7EQM0 130 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 CDKN1BP46527 198 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 PMS2P11Q13670 270 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 IGF2BP2-AS1Q96M15 143 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 C20orf144Q9BQM9 153 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 STAB2Q8WWQ8 2551 aa12.09□□□□□ -0.47
SHKBP1-219ENST00000599575 ZNF705DP0CH99 300 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 ZNF705BP0CI00 300 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 LEPP41159 167 aa12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 FGF8P55075 233 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 SLC35B3Q9H1N7 401 aa12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 XCL2Q9UBD3 114 aa12.08□□□□□ -0.48
SHKBP1-219ENST00000599575 DNAH9Q9NYC9 4486 aa12.07□□□□□ -0.48
SHKBP1-219ENST00000599575 FAM74A7A6NL05 159 aa12.07□□□□□ -0.48
SHKBP1-219ENST00000599575 ZNF705EA8MWA4 302 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-219ENST00000599575 INSP01308 110 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms