RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 HERC2O95714 4834 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 DNAH2Q9P225 4427 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 FAM24AA6NFZ4 105 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 J3KRW8 73 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 IGLC2P0DOY2 106 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 S100A11P31949 105 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 HBG1P69891 147 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 HBG2P69892 147 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 CLINT1Q14677 625 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 CCDC32Q9BV29 185 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 KRTAP17-1Q9BYP8 105 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 NDUFA13Q9P0J0 144 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 WDR83OSQ9Y284 106 aa6.89□□□□□ -1.31
VRK3-216ENST00000599342 FAM240BA0A1B0GVZ2 78 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 SNURFLB1AK76 121 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 PRAC2D3DTV9 90 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 H3BQ15 152 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 RLN2P04090 185 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 H2AFB2P0C5Z0 115 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 LEPP41159 167 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 RPL29P47914 159 aaKnown RBP6.88□□□□□ -1.31
VRK3-216ENST00000599342 SULT1A1P50225 295 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 GFI1BQ5VTD9 330 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 SAT2Q96F10 170 aaPredicted RBP6.88□□□□□ -1.31
VRK3-216ENST00000599342 PARD6GQ9BYG4 376 aaPredicted RBP6.88□□□□□ -1.31
VRK3-216ENST00000599342 LYRM2Q9NU23 88 aaPredicted RBP6.88□□□□□ -1.31
VRK3-216ENST00000599342 SLC39A9Q9NUM3 307 aa6.88□□□□□ -1.31
VRK3-216ENST00000599342 TRAV5A0A0B4J249 113 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 IGSF23A1L1A6 192 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 ZNF253O75346 499 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 FGF7P21781 194 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 OR5I1Q13606 314 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 RAB32Q13637 225 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 KIR3DS1Q14943 382 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 VWC2Q2TAL6 325 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 MZT2BQ6NZ67 158 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 TMEM252Q8N6L7 170 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 RNF141Q8WVD5 230 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 MRPL53Q96EL3 112 aaKnown RBP6.87□□□□□ -1.31
VRK3-216ENST00000599342 ODF3Q96PU9 254 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 C11orf1Q9H5F2 150 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 GPN1Q9HCN4 374 aaPredicted RBP6.87□□□□□ -1.31
VRK3-216ENST00000599342 ZNF586Q9NXT0 402 aa6.87□□□□□ -1.31
VRK3-216ENST00000599342 TRAV12-3A0A0B4J271 114 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 NBDYA0A0U1RRE5 68 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GAGE12BA1L429 117 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 NPIPB6E9PJ23 425 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 MPDU1O75352 247 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GAGE7O76087 117 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GAGE12FP0CL80 117 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GAGE12GP0CL81 117 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GAGE12IP0CL82 117 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 CT45A10P0DMU9 189 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 ATP6V1FQ16864 119 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 ZNRF2Q8NHG8 242 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 GNPNAT1Q96EK6 184 aaPredicted RBP6.86□□□□□ -1.31
VRK3-216ENST00000599342 PYGO2Q9BRQ0 406 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 TIMM9Q9Y5J7 89 aa6.86□□□□□ -1.31
VRK3-216ENST00000599342 NACAE9PAV3 2078 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 TRBV19A0A075B6N1 114 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 TRAV26-1A0A087WT03 109 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 SLC25A5P05141 298 aaKnown RBP6.85□□□□□ -1.31
VRK3-216ENST00000599342 HIST1H1EP10412 219 aaKnown RBP6.85□□□□□ -1.31
VRK3-216ENST00000599342 M6PRP20645 277 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 PDE6HQ13956 83 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 SSX7Q7RTT5 188 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 C6orf223Q8N319 242 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 CHAC2Q8WUX2 184 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 AAMDCQ9H7C9 122 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 TMEM14CQ9P0S9 112 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 PRELID1Q9Y255 219 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 LINC00588Q9Y4M8 146 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 KIAA1109Q2LD37 5005 aa6.85□□□□□ -1.31
VRK3-216ENST00000599342 A0A0J9YY99 117 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 C7orf71A4D174 169 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 M0R3E3 92 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 IL15RAQ13261 267 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 ZNF575Q86XF7 245 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 LINC00612Q8N6U2 182 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 ZNF680Q8NEM1 530 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 ENKURQ8TC29 256 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 RXFP4Q8TDU9 374 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 BLNKQ8WV28 456 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 S100ZQ8WXG8 99 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 NPCDR1Q9BY65 106 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 SLC25A31Q9H0C2 315 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 PKHD1P08F94 4074 aa6.84□□□□□ -1.31
VRK3-216ENST00000599342 DNAH17Q9UFH2 4485 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 DYNC1H1Q14204 4646 aaKnown RBP6.83□□□□□ -1.32
VRK3-216ENST00000599342 TRGV2A0A075B6R0 118 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 PYYP10082 97 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 TNP2Q05952 138 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 DAZ2Q13117 558 aaKnown RBP6.83□□□□□ -1.32
VRK3-216ENST00000599342 ERCC8Q13216 396 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 LRRC37A5PQ49AS3 106 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 TTC32Q5I0X7 151 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 LINC00299Q6ZSB3 139 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 OR5C1Q8NGR4 320 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 THAP6Q8TBB0 222 aa6.83□□□□□ -1.32
VRK3-216ENST00000599342 ZNF503Q96F45 646 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms