RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 HSD17B11Q8NBQ5 300 aa9.99□□□□□ -0.81
UPF1-205ENST00000598209 OR10J6PQ8NGY7 276 aa9.99□□□□□ -0.81
UPF1-205ENST00000598209 TNFSF18Q9UNG2 199 aa9.99□□□□□ -0.81
UPF1-205ENST00000598209 TRAV12-2A0A075B6T6 113 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 M0R3E3 92 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 OR7C2O60412 319 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 INSP01308 110 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 OR10J4P0C629 311 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 M6PRP20645 277 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 CEMP1Q6PRD7 247 aaPredicted RBP9.98□□□□□ -0.81
UPF1-205ENST00000598209 BAP18Q8IXM2 172 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 EXOC3-AS1Q8N2X6 119 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 PHLDA1Q8WV24 401 aaPredicted RBP9.98□□□□□ -0.81
UPF1-205ENST00000598209 RNF141Q8WVD5 230 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 FXYD5Q96DB9 178 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 MRPL53Q96EL3 112 aaKnown RBP9.98□□□□□ -0.81
UPF1-205ENST00000598209 PRELID1Q9Y255 219 aa9.98□□□□□ -0.81
UPF1-205ENST00000598209 TENM2Q9NT68 2774 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 HBE1P02100 147 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 TAS2R45P59539 299 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 RAB2AP61019 212 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 KHDC3LQ587J8 217 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 ZNF503Q96F45 646 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 TMEM208Q9BTX3 173 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 AAMDCQ9H7C9 122 aa9.97□□□□□ -0.81
UPF1-205ENST00000598209 DYNC2H1Q8NCM8 4307 aaKnown RBP9.97□□□□□ -0.81
UPF1-205ENST00000598209 A0A1W2PPV4 95 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 SMLR1H3BR10 107 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 EIF3GO75821 320 aaKnown RBP eCLIP9.96□□□□□ -0.82
UPF1-205ENST00000598209 ATP6V0CP27449 155 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 CDKN1BP46527 198 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 UBE2L3P68036 154 aaKnown RBP9.96□□□□□ -0.82
UPF1-205ENST00000598209 ICAM4Q14773 271 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 FAM122CQ6P4D5 195 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 OR2G3Q8NGZ4 309 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 PHYHIPLQ96FC7 376 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 PSMG3Q9BT73 122 aaPredicted RBP9.96□□□□□ -0.82
UPF1-205ENST00000598209 CELA1Q9UNI1 258 aa9.96□□□□□ -0.82
UPF1-205ENST00000598209 KLK5Q9Y337 293 aaPredicted RBP9.96□□□□□ -0.82
UPF1-205ENST00000598209 LCE6AA0A183 80 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 LOC102723971A0A1B0GUV8 181 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 TMEM189A5PLL7 270 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 NPIPB6E9PJ23 425 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 ARPC5O15511 151 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 EMP1P54849 157 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 RRN3P1Q2M238 152 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 RPL7L1Q6DKI1 246 aaKnown RBP9.95□□□□□ -0.82
UPF1-205ENST00000598209 RPP25LQ8N5L8 163 aaKnown RBP9.95□□□□□ -0.82
UPF1-205ENST00000598209 OR10G4Q8NGN3 311 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 OR10G9Q8NGN4 311 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 OR10G7Q8NGN6 311 aa9.95□□□□□ -0.82
UPF1-205ENST00000598209 BORCS7-ASMTA0A0B4J1R7 106 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 ZNF705GA8MUZ8 300 aaPredicted RBP9.94□□□□□ -0.82
UPF1-205ENST00000598209 CT45A10P0DMU9 189 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 TSPOP30536 169 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 ERCC8Q13216 396 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 ODF3Q96PU9 254 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 SH3BGRL3Q9H299 93 aa9.94□□□□□ -0.82
UPF1-205ENST00000598209 HMGB3O15347 200 aaKnown RBP9.93□□□□□ -0.82
UPF1-205ENST00000598209 JTBO76095 146 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 PRM2P04554 102 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 LEPP41159 167 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 CDC34P49427 236 aaPredicted RBP9.93□□□□□ -0.82
UPF1-205ENST00000598209 RANP62826 216 aaKnown RBP9.93□□□□□ -0.82
UPF1-205ENST00000598209 SERF2P84101 59 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 KIR3DS1Q14943 382 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 C12orf74Q32Q52 190 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 PQLC2Q6ZP29 291 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 Q6ZTC4 211 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 ZNF767PQ75MW2 155 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 LYPD1Q8N2G4 141 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 TMEM256Q8N2U0 113 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 GNPNAT1Q96EK6 184 aaPredicted RBP9.93□□□□□ -0.82
UPF1-205ENST00000598209 LINC01587Q99440 93 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 Q9H3A6 140 aa9.93□□□□□ -0.82
UPF1-205ENST00000598209 LYSTQ99698 3801 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 IGKV2-40A0A087WW87 121 aaPredicted RBP9.92□□□□□ -0.82
UPF1-205ENST00000598209 C11orf94C9JXX5 98 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 J3KRW8 73 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 TAAR5O14804 337 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 IGKV2D-40P01614 121 aaPredicted RBP9.92□□□□□ -0.82
UPF1-205ENST00000598209 MBP02144 154 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 SPART-AS1P0CW21 52 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 GFI1BQ5VTD9 330 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 LINC00477Q96M19 166 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 C20orf144Q9BQM9 153 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 AGPAT4-IT1Q9H0P7 198 aa9.92□□□□□ -0.82
UPF1-205ENST00000598209 YTHDF2Q9Y5A9 579 aaKnown RBP9.92□□□□□ -0.82
UPF1-205ENST00000598209 ARL14EPLP0DKL9 152 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 CSN1S1P47710 185 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 TAS2R60P59551 318 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 FAM222AQ5U5X8 452 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 C9orf47Q6ZRZ4 202 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 C2CD4CQ8TF44 421 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 RAB24Q969Q5 203 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 VGLL1Q99990 258 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 DKK2Q9UBU2 259 aa9.91□□□□□ -0.82
UPF1-205ENST00000598209 TRAV10A0A0B4J240 114 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 TEX48A0A1B0GUV7 120 aa9.9□□□□□ -0.82
UPF1-205ENST00000598209 STAG3L2P0CL84 134 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms