RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 BCL2P10415 239 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 CST9LP1Q5W188 147 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 FAM24BQ8N5W8 94 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 FAM210AQ96ND0 272 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 RARRES2Q99969 163 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 OTORQ9NRC9 128 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 PGPA6NDG6 321 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 FRMD6-AS1P0C7T7 363 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 HLA-DMBP28068 263 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 ID1P41134 155 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 SUMO1P63165 101 aaKnown RBP11.13□□□□□ -0.63
TRIM28-207ENST00000597136 ICAM4Q14773 271 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 ZNF124Q15973 351 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 ODF3L2Q3SX64 289 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 RNF182Q8N6D2 247 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 CITED4Q96RK1 184 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 ASCL2Q99929 193 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 NKX6-2Q9C056 277 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-207ENST00000597136 AAMDCQ9H7C9 122 aa11.13□□□□□ -0.63
TRIM28-207ENST00000597136 LOC102723971A0A1B0GUV8 181 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 OR4C46A6NHA9 309 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 TAGLN2P37802 199 aaKnown RBP11.12□□□□□ -0.63
TRIM28-207ENST00000597136 ATP5G3P48201 142 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 ZNF506Q5JVG8 444 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 CCDC28AQ8IWP9 274 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 C20orf173Q96LM9 149 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 MED9Q9NWA0 146 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 VAX2Q9UIW0 290 aa11.12□□□□□ -0.63
TRIM28-207ENST00000597136 LINC00862A6NCI5 91 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 C11orf94C9JXX5 98 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 SNRPD3P62318 126 aaKnown RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 MEF2BQ02080 365 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 TOR2AQ5JU69 321 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 APRG1Q8IVJ8 170 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 EIF5A2Q9GZV4 153 aaKnown RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 CLEC5AQ9NY25 188 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 RBMY1BA6NDE4 496 aaKnown RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 RBMY1EA6NEQ0 496 aaKnown RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 M0R3E3 92 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 RBMY1DP0C7P1 496 aaKnown RBP11.11□□□□□ -0.63
TRIM28-207ENST00000597136 ZNF688P0C7X2 276 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 PSG3Q16557 428 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 SBSPONQ8IVN8 264 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 LINC00052Q96N35 136 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 B9D2Q9BPU9 175 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 TXNDC17Q9BRA2 123 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 TUBA4BQ9H853 241 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 SRD5A3Q9H8P0 318 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 PRELID1Q9Y255 219 aa11.11□□□□□ -0.63
TRIM28-207ENST00000597136 STAB2Q8WWQ8 2551 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 RAB19A4D1S5 217 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 ZNF705FA8MVS1 300 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-207ENST00000597136 A8MZ25 164 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 SLC25A5P05141 298 aaKnown RBP11.1□□□□□ -0.63
TRIM28-207ENST00000597136 C5orf17Q8NAS9 161 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 RXFP4Q8TDU9 374 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 MRPL53Q96EL3 112 aaKnown RBP11.1□□□□□ -0.63
TRIM28-207ENST00000597136 MAP6D1Q9H9H5 199 aa11.1□□□□□ -0.63
TRIM28-207ENST00000597136 SRSF3P84103 164 aaKnown RBP11.09□□□□□ -0.63
TRIM28-207ENST00000597136 PSMG4Q5JS54 123 aa11.09□□□□□ -0.63
TRIM28-207ENST00000597136 LINC00322Q6ZN03 302 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-207ENST00000597136 CMTM2Q8TAZ6 248 aa11.09□□□□□ -0.63
TRIM28-207ENST00000597136 EPDR1Q9UM22 224 aa11.09□□□□□ -0.63
TRIM28-207ENST00000597136 PRB4P10163 310 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-207ENST00000597136 CSN1S1P47710 185 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 GNG5P63218 68 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 COMMD7Q86VX2 200 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 ARL6IP6Q8N6S5 226 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 ZNF738Q8NE65 137 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 RPUSD4Q96CM3 377 aaKnown RBP11.08□□□□□ -0.64
TRIM28-207ENST00000597136 TCEAL7Q9BRU2 100 aa11.08□□□□□ -0.64
TRIM28-207ENST00000597136 PRAC2D3DTV9 90 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 PDE6DO43924 150 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 DEFB131AP59861 70 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 PEA15Q15121 130 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 SCO2A0A1W2PP80 73 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 DIRC3C9JPN6 131 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 C9JQL5 133 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 TCRAP04437 139 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 HIST1H2BAQ96A08 127 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 SMDT1Q9H4I9 107 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 RPH3ALQ9UNE2 315 aa11.07□□□□□ -0.64
TRIM28-207ENST00000597136 HUWE1Q7Z6Z7 4374 aaKnown RBP11.06□□□□□ -0.64
TRIM28-207ENST00000597136 F6UZH7 168 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 PEX7O00628 323 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 NDUFS6O75380 124 aaKnown RBP11.06□□□□□ -0.64
TRIM28-207ENST00000597136 CMC4P56277 68 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-207ENST00000597136 DEFB1P60022 68 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 C11orf52Q96A22 123 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 FAM110AQ9BQ89 295 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 ATG101Q9BSB4 218 aa11.06□□□□□ -0.64
TRIM28-207ENST00000597136 IGKV2-40A0A087WW87 121 aaPredicted RBP11.05□□□□□ -0.64
TRIM28-207ENST00000597136 IGKV2D-40P01614 121 aaPredicted RBP11.05□□□□□ -0.64
TRIM28-207ENST00000597136 SRP19P09132 144 aaKnown RBP11.05□□□□□ -0.64
TRIM28-207ENST00000597136 GOLT1AQ6ZVE7 132 aa11.05□□□□□ -0.64
TRIM28-207ENST00000597136 EIF4E3Q8N5X7 224 aaKnown RBP11.05□□□□□ -0.64
TRIM28-207ENST00000597136 CYB561D1Q8N8Q1 229 aa11.05□□□□□ -0.64
TRIM28-207ENST00000597136 TREM1Q9NP99 234 aa11.05□□□□□ -0.64
TRIM28-207ENST00000597136 F6UB75 175 aa11.04□□□□□ -0.64
TRIM28-207ENST00000597136 TMEM250H0YL14 139 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms