RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CSN1S1P47710 185 aa11.01□□□□□ -0.65
VRK3-212ENST00000596814 OR2K2Q8NGT1 345 aa11.01□□□□□ -0.65
VRK3-212ENST00000596814 HIST1H2BAQ96A08 127 aa11.01□□□□□ -0.65
VRK3-212ENST00000596814 MDFIQ99750 246 aa11.01□□□□□ -0.65
VRK3-212ENST00000596814 ATG101Q9BSB4 218 aa11.01□□□□□ -0.65
VRK3-212ENST00000596814 TMEM218A2RU14 115 aa11□□□□□ -0.65
VRK3-212ENST00000596814 RIPPLY3P57055 190 aa11□□□□□ -0.65
VRK3-212ENST00000596814 PSG3Q16557 428 aa11□□□□□ -0.65
VRK3-212ENST00000596814 C9orf66Q5T8R8 295 aa11□□□□□ -0.65
VRK3-212ENST00000596814 RPUSD4Q96CM3 377 aaKnown RBP11□□□□□ -0.65
VRK3-212ENST00000596814 MRPL53Q96EL3 112 aaKnown RBP11□□□□□ -0.65
VRK3-212ENST00000596814 SPAG8Q99932 426 aaPredicted RBP11□□□□□ -0.65
VRK3-212ENST00000596814 VWFP04275 2813 aa11□□□□□ -0.65
VRK3-212ENST00000596814 IZUMO1RA6ND01 250 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 TCRAP04437 139 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 AKR1C3P42330 323 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 INSL3P51460 131 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 SNRPD3P62318 126 aaKnown RBP10.99□□□□□ -0.65
VRK3-212ENST00000596814 ARL6IP6Q8N6S5 226 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 ZNF738Q8NE65 137 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 WFDC9Q8NEX5 89 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 C2CD4CQ8TF44 421 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 C20orf173Q96LM9 149 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 LINC00052Q96N35 136 aa10.99□□□□□ -0.65
VRK3-212ENST00000596814 MCRIP2Q9BUT9 160 aaKnown RBP10.99□□□□□ -0.65
VRK3-212ENST00000596814 OR4C46A6NHA9 309 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 ZNF705FA8MVS1 300 aaPredicted RBP10.98□□□□□ -0.65
VRK3-212ENST00000596814 DIRC3C9JPN6 131 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 ZNF688P0C7X2 276 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 GUCA2BQ16661 112 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 SOHLH1Q5JUK2 328 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 LCN12Q6JVE5 192 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 GOLT1AQ6ZVE7 132 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 FAM24BQ8N5W8 94 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 PARLQ9H300 379 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 SERTM2A0A1B0GWG4 89 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 ATP6V1G1O75348 118 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 PRB4P10163 310 aaPredicted RBP10.98□□□□□ -0.65
VRK3-212ENST00000596814 CNN1P51911 297 aaKnown RBP10.98□□□□□ -0.65
VRK3-212ENST00000596814 ZNF674Q2M3X9 581 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 DERL1Q9BUN8 251 aa10.98□□□□□ -0.65
VRK3-212ENST00000596814 F8W036 122 aa10.97□□□□□ -0.65
VRK3-212ENST00000596814 K7EQM0 130 aa10.97□□□□□ -0.65
VRK3-212ENST00000596814 ADCYAP1P18509 176 aa10.97□□□□□ -0.65
VRK3-212ENST00000596814 PSMG4Q5JS54 123 aa10.97□□□□□ -0.65
VRK3-212ENST00000596814 SMIM7Q9BQ49 75 aa10.97□□□□□ -0.65
VRK3-212ENST00000596814 IGKV2-40A0A087WW87 121 aaPredicted RBP10.96□□□□□ -0.65
VRK3-212ENST00000596814 KRBOX1C9JBD0 128 aa10.96□□□□□ -0.65
VRK3-212ENST00000596814 IGKV2D-40P01614 121 aaPredicted RBP10.96□□□□□ -0.65
VRK3-212ENST00000596814 RPL35P42766 123 aaKnown RBP10.96□□□□□ -0.65
VRK3-212ENST00000596814 SEC11CQ9BY50 192 aa10.96□□□□□ -0.65
VRK3-212ENST00000596814 ZNF256Q9Y2P7 627 aaPredicted RBP10.96□□□□□ -0.65
VRK3-212ENST00000596814 TRAV34A0A0B4J273 112 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 ZNF727A8MUV8 499 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 PRAC2D3DTV9 90 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 UBE2G1P62253 170 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 TMEM75Q8N9X5 138 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 FMC1Q96HJ9 113 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 LINC00479Q96M42 142 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 TRRAPQ9Y4A5 3859 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 IGLL1P15814 213 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 TMEM183BQ1AE95 376 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 FAM74A3Q4VXF1 159 aa10.95□□□□□ -0.66
VRK3-212ENST00000596814 ANK2Q01484 3957 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 TRAV8-1A0A0A6YYK1 113 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 RBAKDNA6NC62 111 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 S100A9P06702 114 aaKnown RBP10.94□□□□□ -0.66
VRK3-212ENST00000596814 TAS2R60P59551 318 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 SGK494Q96LW2 274 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 NIPSNAP3BQ9BS92 247 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 MAP6D1Q9H9H5 199 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 KLF12Q9Y4X4 402 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 NOTCH3Q9UM47 2321 aa10.94□□□□□ -0.66
VRK3-212ENST00000596814 DEFB131AP59861 70 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 DEFB1P60022 68 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 CENPWQ5EE01 88 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 C10orf91Q5T1B1 145 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 OR10J6PQ8NGY7 276 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 SORL1Q92673 2214 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 GPR61Q9BZJ8 451 aa10.93□□□□□ -0.66
VRK3-212ENST00000596814 TRBV20OR9-2A0A075B6H5 130 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 FBLL1A6NHQ2 334 aaKnown RBP10.92□□□□□ -0.66
VRK3-212ENST00000596814 C9JCJ5 164 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 F6UB75 175 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 IGLV2-11P01706 119 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 GNG4P50150 75 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 FLI1Q01543 452 aaPredicted RBP10.92□□□□□ -0.66
VRK3-212ENST00000596814 PRR31Q5SQ13 230 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 Q86TA4 180 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 OR8A1Q8NGG7 326 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 IGF2BP2-AS1Q96M15 143 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 VGLL1Q99990 258 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 PSG8Q9UQ74 426 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 CARHSP1Q9Y2V2 147 aaKnown RBP10.92□□□□□ -0.66
VRK3-212ENST00000596814 TRBV6-1A0A0K0K1D8 114 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 WIPF1O43516 503 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 HIST1H1AQ02539 215 aaPredicted RBP10.92□□□□□ -0.66
VRK3-212ENST00000596814 ERCC8Q13216 396 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 BEAN1Q3B7T3 259 aa10.92□□□□□ -0.66
VRK3-212ENST00000596814 ODF3L2Q3SX64 289 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms