RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MRPL53Q96EL3 112 aaKnown RBP11.63□□□□□ -0.55
TRIM28-206ENST00000595974 SLC25A2Q9BXI2 301 aa11.63□□□□□ -0.55
TRIM28-206ENST00000595974 LOC102723971A0A1B0GUV8 181 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 SPART-AS1P0CW21 52 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 PYYP10082 97 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 C12orf74Q32Q52 190 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 MIR17HGQ75NE6 70 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 SCGB1C1Q8TD33 95 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 ASB13Q8WXK3 278 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 FAM167A-AS1Q96KT0 104 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 SMIM3Q9BZL3 60 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 PRELID1Q9Y255 219 aa11.62□□□□□ -0.55
TRIM28-206ENST00000595974 TRAV12-2A0A075B6T6 113 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 PRAC2D3DTV9 90 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 LY6G6CO95867 125 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 CDKN1BP46527 198 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 EMP1P54849 157 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 RGS21Q2M5E4 152 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 TMEM256Q8N2U0 113 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 FUT9Q9Y231 359 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 TIMM9Q9Y5J7 89 aa11.61□□□□□ -0.55
TRIM28-206ENST00000595974 NDUFB4O95168 129 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 GIPP09681 153 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-206ENST00000595974 PRB4P10163 310 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-206ENST00000595974 TSPOP30536 169 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 FFAR4Q5NUL3 377 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 ODF3Q96PU9 254 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 AAMDCQ9H7C9 122 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 DKK2Q9UBU2 259 aa11.6□□□□□ -0.55
TRIM28-206ENST00000595974 IGLL5B9A064 214 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 NPIPB6E9PJ23 425 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 FAM222AQ5U5X8 452 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 LGALS9CQ6DKI2 356 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 ZNF767PQ75MW2 155 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 RPP25LQ8N5L8 163 aaKnown RBP11.59□□□□□ -0.55
TRIM28-206ENST00000595974 BLNKQ8WV28 456 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 AQP10Q96PS8 301 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 C20orf144Q9BQM9 153 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 PAXXQ9BUH6 204 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 OR51M1Q9H341 326 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 WFDC1Q9HC57 220 aa11.59□□□□□ -0.55
TRIM28-206ENST00000595974 YTHDF2Q9Y5A9 579 aaKnown RBP11.59□□□□□ -0.55
TRIM28-206ENST00000595974 DEFB131BA0A096LNP1 70 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 M0R3E3 92 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 OR7C2O60412 319 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 NBEAP1P0C6P0 100 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 ZNF266Q14584 549 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 NIPSNAP3BQ9BS92 247 aa11.58□□□□□ -0.56
TRIM28-206ENST00000595974 ZNF705GA8MUZ8 300 aaPredicted RBP11.57□□□□□ -0.56
TRIM28-206ENST00000595974 LEPP41159 167 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 TAS2R45P59539 299 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 TAS2R60P59551 318 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 OXA1LQ15070 435 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 KHDC3LQ587J8 217 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 RNF141Q8WVD5 230 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 FXYD5Q96DB9 178 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 LINC01587Q99440 93 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 APLNQ9ULZ1 77 aa11.57□□□□□ -0.56
TRIM28-206ENST00000595974 IGHV4-4A0A075B6R2 117 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 H7BYZ3 331 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 OR10J4P0C629 311 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 ICAM4Q14773 271 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 ACOT6Q3I5F7 207 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-206ENST00000595974 EXOC3-AS1Q8N2X6 119 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 KMT2AQ03164 3969 aa11.56□□□□□ -0.56
TRIM28-206ENST00000595974 LYRM9A8MSI8 78 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 CT45A10P0DMU9 189 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 M6PRP20645 277 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 UBE2L3P68036 154 aaKnown RBP11.55□□□□□ -0.56
TRIM28-206ENST00000595974 GFI1BQ5VTD9 330 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 ZNF503Q96F45 646 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 PHYHIPLQ96FC7 376 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 C16orf74Q96GX8 76 aa11.55□□□□□ -0.56
TRIM28-206ENST00000595974 DAD1P61803 113 aa11.54□□□□□ -0.56
TRIM28-206ENST00000595974 KIR3DS1Q14943 382 aa11.54□□□□□ -0.56
TRIM28-206ENST00000595974 ZNF493Q6ZR52 646 aa11.54□□□□□ -0.56
TRIM28-206ENST00000595974 LYPD1Q8N2G4 141 aa11.54□□□□□ -0.56
TRIM28-206ENST00000595974 LINC00477Q96M19 166 aa11.54□□□□□ -0.56
TRIM28-206ENST00000595974 PLAC8L1A1L4L8 177 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 PRM2P04554 102 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 AZU1P20160 251 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 Q5BKY6 102 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 FAM122CQ6P4D5 195 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 PQLC2Q6ZP29 291 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 C9orf47Q6ZRZ4 202 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 INO80EQ8NBZ0 244 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-206ENST00000595974 OR2T35Q8NGX2 323 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 OR2G3Q8NGZ4 309 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 TMEM263Q8WUH6 116 aaKnown RBP11.53□□□□□ -0.56
TRIM28-206ENST00000595974 FAM210BQ96KR6 192 aa11.53□□□□□ -0.56
TRIM28-206ENST00000595974 PSMG3Q9BT73 122 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-206ENST00000595974 VPS13DQ5THJ4 4388 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 FXYD6-FXYD2A0A087WZ82 144 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 A0A1W2PPV4 95 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 SLC25A5P05141 298 aaKnown RBP11.52□□□□□ -0.57
TRIM28-206ENST00000595974 HTN1P15515 57 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 RAB2AP61019 212 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 ERCC8Q13216 396 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 TMEM78Q5T7P6 136 aa11.52□□□□□ -0.57
TRIM28-206ENST00000595974 HSD17B11Q8NBQ5 300 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms