RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 F6UB75 175 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 NMBP08949 121 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 FGF7P21781 194 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 IFITM3Q01628 133 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 HIST1H1AQ02539 215 aaPredicted RBP7.52□□□□□ -1.21
LIG3-212ENST00000590181 MIC13Q5XKP0 118 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 Q6ZTC4 211 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 LYPD1Q8N2G4 141 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 RNF182Q8N6D2 247 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 OR5C1Q8NGR4 320 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 PPP1R1CQ8WVI7 109 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 AAMDCQ9H7C9 122 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 APLNQ9ULZ1 77 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 IGHV4-4A0A075B6R2 117 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 IGHV3OR16-12A0A075B7B8 117 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 TRBV7-9A0A0J9YWB2 115 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 H7BYZ3 331 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 MPC2O95563 127 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 PTTG1O95997 202 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 IFNA5P01569 189 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 FAM3BP58499 235 aaPredicted RBP7.51□□□□□ -1.21
LIG3-212ENST00000590181 NHLH2Q02577 135 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 C16orf74Q96GX8 76 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 LINC00477Q96M19 166 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 TIMM9Q9Y5J7 89 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 DNAH11Q96DT5 4516 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 PKD1P98161 4303 aa7.51□□□□□ -1.21
LIG3-212ENST00000590181 TRBV19A0A075B6N1 114 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 CRXO43186 299 aaPredicted RBP7.5□□□□□ -1.21
LIG3-212ENST00000590181 LEPP41159 167 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 H2BFSP57053 126 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 FXYD7P58549 80 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 TAS2R45P59539 299 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 SPINK13Q1W4C9 94 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 FAM222AQ5U5X8 452 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 CCDC28AQ8IWP9 274 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 ARL6IP6Q8N6S5 226 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 C15orf53Q8NAA6 179 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 SCGB1C1Q8TD33 95 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 LINC01587Q99440 93 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 ATP5SQ99766 215 aa7.5□□□□□ -1.21
LIG3-212ENST00000590181 WDR61Q9GZS3 305 aaKnown RBP7.5□□□□□ -1.21
LIG3-212ENST00000590181 TIMM8BQ9Y5J9 83 aaPredicted RBP7.5□□□□□ -1.21
LIG3-212ENST00000590181 H3BQ15 152 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 M0R2Z0 102 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 NBEAP1P0C6P0 100 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 RPL12P30050 165 aaKnown RBP7.49□□□□□ -1.21
LIG3-212ENST00000590181 DAD1P61803 113 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 RNF212Q495C1 297 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 IGFL4Q6B9Z1 124 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 THAP6Q8TBB0 222 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 TMEM263Q8WUH6 116 aaKnown RBP7.49□□□□□ -1.21
LIG3-212ENST00000590181 CELA1Q9UNI1 258 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 YTHDF2Q9Y5A9 579 aaKnown RBP7.49□□□□□ -1.21
LIG3-212ENST00000590181 MUC4Q99102 2169 aa7.49□□□□□ -1.21
LIG3-212ENST00000590181 CBY3A6NI87 242 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 NPIPB6E9PJ23 425 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 SIX6O95475 246 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 SLC25A5P05141 298 aaKnown RBP7.48□□□□□ -1.21
LIG3-212ENST00000590181 EMP1P54849 157 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 DEFB1P60022 68 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 LRRC37A5PQ49AS3 106 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 C9orf47Q6ZRZ4 202 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 PYGO2Q9BRQ0 406 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 LINC00467Q9BRT7 94 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 OR51M1Q9H341 326 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 ZNF586Q9NXT0 402 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 OR5AC2Q9NZP5 309 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 FUT9Q9Y231 359 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 HSPB11Q9Y547 144 aa7.48□□□□□ -1.21
LIG3-212ENST00000590181 RBAKDNA6NC62 111 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 H0YIZ8 118 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 CSN1S1P47710 185 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 ZNF266Q14584 549 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 KHDC3LQ587J8 217 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 FAM74A1Q5RGS3 127 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 POM121L12Q8N7R1 296 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 RXFP4Q8TDU9 374 aa7.47□□□□□ -1.21
LIG3-212ENST00000590181 TRAV5A0A0B4J249 113 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 SLC17A3O00476 420 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 MBP02144 154 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 ATP5G1P05496 136 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 CRISP2P16562 243 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 ATP5G3P48201 142 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 CLINT1Q14677 625 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 TMEM78Q5T7P6 136 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 MORN5Q5VZ52 161 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 PQLC2Q6ZP29 291 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 BAP18Q8IXM2 172 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 ZNF680Q8NEM1 530 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 RNF141Q8WVD5 230 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 PAXXQ9BUH6 204 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 MED28Q9H204 178 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 LENEPQ9Y5L5 61 aa7.46□□□□□ -1.22
LIG3-212ENST00000590181 ZNF705GA8MUZ8 300 aaPredicted RBP7.45□□□□□ -1.22
LIG3-212ENST00000590181 SNURFLB1AK76 121 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 H3BNG1 76 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 NDUFB4O95168 129 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 MED14OSP0DP75 135 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 M6PRP20645 277 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms