RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ACOT6Q3I5F7 207 aaPredicted RBP7.86□□□□□ -1.15
CLIP3-203ENST00000586457 GCSAMLQ5JQS6 135 aa7.86□□□□□ -1.15
CLIP3-203ENST00000586457 TMEM256Q8N2U0 113 aa7.86□□□□□ -1.15
CLIP3-203ENST00000586457 PAXXQ9BUH6 204 aa7.86□□□□□ -1.15
CLIP3-203ENST00000586457 ZNF586Q9NXT0 402 aa7.86□□□□□ -1.15
CLIP3-203ENST00000586457 FUT9Q9Y231 359 aa7.86□□□□□ -1.15
CLIP3-203ENST00000586457 DEFB131BA0A096LNP1 70 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 SLC17A3O00476 420 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 NBEAP1P0C6P0 100 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 PYYP10082 97 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 LEPP41159 167 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 KHDC3LQ587J8 217 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 ZNF767PQ75MW2 155 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 MIR17HGQ75NE6 70 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 CCDC28AQ8IWP9 274 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 RPP25LQ8N5L8 163 aaKnown RBP7.85□□□□□ -1.15
CLIP3-203ENST00000586457 RNF141Q8WVD5 230 aa7.85□□□□□ -1.15
CLIP3-203ENST00000586457 SAT2Q96F10 170 aaPredicted RBP7.85□□□□□ -1.15
CLIP3-203ENST00000586457 ZNF705GA8MUZ8 300 aaPredicted RBP7.84□□□□□ -1.15
CLIP3-203ENST00000586457 J3KRW8 73 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 GIPP09681 153 aaPredicted RBP7.84□□□□□ -1.15
CLIP3-203ENST00000586457 OR10J4P0C629 311 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 PRB4P10163 310 aaPredicted RBP7.84□□□□□ -1.15
CLIP3-203ENST00000586457 DAD1P61803 113 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 ICAM4Q14773 271 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 FAM74A1Q5RGS3 127 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 TMEM78Q5T7P6 136 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 FAM122CQ6P4D5 195 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 AMTNQ6UX39 209 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 Q6ZTC4 211 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 BAP18Q8IXM2 172 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 C1orf158Q8N1D5 194 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 MRPL53Q96EL3 112 aaKnown RBP7.84□□□□□ -1.15
CLIP3-203ENST00000586457 NIPSNAP3BQ9BS92 247 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 SLC25A2Q9BXI2 301 aa7.84□□□□□ -1.15
CLIP3-203ENST00000586457 FXYD6-FXYD2A0A087WZ82 144 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 BORCS7-ASMTA0A0B4J1R7 106 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 A8MTW9 85 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 PRAC2D3DTV9 90 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 H7BYZ3 331 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 HTN3P15516 51 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 RANP62826 216 aaKnown RBP7.83□□□□□ -1.16
CLIP3-203ENST00000586457 UBE2L3P68036 154 aaKnown RBP7.83□□□□□ -1.16
CLIP3-203ENST00000586457 FAM222AQ5U5X8 452 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 EXOC3-AS1Q8N2X6 119 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 LINC00477Q96M19 166 aa7.83□□□□□ -1.16
CLIP3-203ENST00000586457 PARD6GQ9BYG4 376 aaPredicted RBP7.83□□□□□ -1.16
CLIP3-203ENST00000586457 YTHDF2Q9Y5A9 579 aaKnown RBP7.83□□□□□ -1.16
CLIP3-203ENST00000586457 MBP02144 154 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 GPX1P07203 203 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 M6PRP20645 277 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 TAS2R60P59551 318 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 C12orf74Q32Q52 190 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 HSD17B11Q8NBQ5 300 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 OR10G4Q8NGN3 311 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 OR10G9Q8NGN4 311 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 OR10G7Q8NGN6 311 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 OR2T35Q8NGX2 323 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 CMTM2Q8TAZ6 248 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 LINC00476Q8WZB0 136 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 C16orf74Q96GX8 76 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 AQP10Q96PS8 301 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 C20orf144Q9BQM9 153 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 NDUFAF3Q9BU61 184 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 DKK2Q9UBU2 259 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 CELA1Q9UNI1 258 aa7.82□□□□□ -1.16
CLIP3-203ENST00000586457 NPIPB6E9PJ23 425 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 M0R3E3 92 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 CRXO43186 299 aaPredicted RBP7.81□□□□□ -1.16
CLIP3-203ENST00000586457 SLC25A5P05141 298 aaKnown RBP7.81□□□□□ -1.16
CLIP3-203ENST00000586457 ZNF493Q6ZR52 646 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 LYPD1Q8N2G4 141 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 RXFP4Q8TDU9 374 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 HYLS1Q96M11 299 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 WFDC1Q9HC57 220 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 DNAH7Q8WXX0 4024 aa7.81□□□□□ -1.16
CLIP3-203ENST00000586457 IGHV4-4A0A075B6R2 117 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 TRAV12-3A0A0B4J271 114 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 LYRM9A8MSI8 78 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 SNURFLB1AK76 121 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 NDUFB4O95168 129 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 CT45A10P0DMU9 189 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 DEFB130BP0DP73 79 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 DEFB130AP0DP74 79 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 RNASE4P34096 147 aaKnown RBP7.8□□□□□ -1.16
CLIP3-203ENST00000586457 SERF2P84101 59 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 ERCC8Q13216 396 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 OXA1LQ15070 435 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 LGALS9CQ6DKI2 356 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 PQLC2Q6ZP29 291 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 FXYD5Q96DB9 178 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 GNPNAT1Q96EK6 184 aaPredicted RBP7.8□□□□□ -1.16
CLIP3-203ENST00000586457 FAM167A-AS1Q96KT0 104 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 ODF3Q96PU9 254 aa7.8□□□□□ -1.16
CLIP3-203ENST00000586457 TIMM8BQ9Y5J9 83 aaPredicted RBP7.8□□□□□ -1.16
CLIP3-203ENST00000586457 GFI1BQ5VTD9 330 aa7.79□□□□□ -1.16
CLIP3-203ENST00000586457 IQCF2Q8IXL9 164 aa7.79□□□□□ -1.16
CLIP3-203ENST00000586457 PSMG3Q9BT73 122 aaPredicted RBP7.79□□□□□ -1.16
CLIP3-203ENST00000586457 ACTR3CQ9C0K3 210 aaPredicted RBP7.79□□□□□ -1.16
CLIP3-203ENST00000586457 AGPAT4-IT1Q9H0P7 198 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms