RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	LMX1A	Q8TE12	382 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	RNF138	Q8WVD3	245 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	C18orf15	Q96N68	181 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	ZNF835	Q9Y2P0	537 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	BRCA2	P51587	3418 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	PLXNB2	O15031	1838 aa		3.42	□□□□□ -1.86
SS18-223	ENST00000583595	CENPF	P49454	3210 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	PLXNB3	Q9ULL4	1909 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	NOTCH3	Q9UM47	2321 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595		A0A1W2PRE2	83 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	C11orf94	C9JXX5	98 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	NDUFS5	O43920	106 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	SSSCA1	O60232	199 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	CST7	O76096	145 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	INS	P01308	110 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	IGHV3-7	P01780	117 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	APCS	P02743	223 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	MT-ATP8	P03928	68 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	HIST1H1T	P22492	207 aa	Predicted RBP	3.41	□□□□□ -1.86
SS18-223	ENST00000583595	PRTN3	P24158	256 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	SRI	P30626	198 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	CXCL5	P42830	114 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	SYNJ2BP	P57105	145 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	KRTAP10-12	P60413	245 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	LYZ	P61626	148 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	HBG1	P69891	147 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	HBG2	P69892	147 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	ATP5G2	Q06055	141 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	PSG7	Q13046	419 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	C6orf99	Q4VX62	202 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	PSMG4	Q5JS54	123 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595		Q6AWC8	147 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595		Q6ZS49	121 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	FAM19A2	Q8N3H0	131 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	ZNF645	Q8N7E2	425 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	OR13C6P	Q8NH95	151 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	ADAT3	Q96EY9	351 aa	Predicted RBP	3.41	□□□□□ -1.86
SS18-223	ENST00000583595	METTL26	Q96S19	204 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	TIMM17A	Q99595	171 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	3.41	□□□□□ -1.86
SS18-223	ENST00000583595	MAP1LC3A	Q9H492	121 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	VSIR	Q9H7M9	311 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595		R4GMQ9	66 aa		3.41	□□□□□ -1.86
SS18-223	ENST00000583595	DENND4C	Q5VZ89	1909 aa		3.4	□□□□□ -1.86
SS18-223	ENST00000583595	RANBP2	P49792	3224 aa	Known RBP	3.4	□□□□□ -1.86
SS18-223	ENST00000583595	CUL9	Q8IWT3	2517 aa		3.4	□□□□□ -1.86
SS18-223	ENST00000583595	DOCK4	Q8N1I0	1966 aa		3.4	□□□□□ -1.86
SS18-223	ENST00000583595		A0A0D9SEW6	157 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595		A0A1B0GWA3	101 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	LOC107986453	A0A1B0GWG9	222 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	C21orf140	B9A014	251 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595		C9JCJ5	164 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	FNDC10	F2Z333	226 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595		H3BMG7	143 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	KLF7	O75840	302 aa	Predicted RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	DHRS3	O75911	302 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	CXorf1	O96002	111 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	IGLV3-27	P01718	113 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	NPPC	P23582	126 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	G6PC	P35575	357 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	DAZ2	Q13117	558 aa	Known RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	WFDC2	Q14508	124 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	CEACAM16	Q2WEN9	425 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	SP6	Q3SY56	376 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	MRPL2	Q5T653	305 aa	Known RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	ZNF695	Q8IW36	515 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	CLDN23	Q96B33	292 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	CHCHD1	Q96BP2	118 aa	Known RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	ZC2HC1A	Q96GY0	325 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	ARHGAP5-AS1	Q96IT6	56 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	AMELY	Q99218	206 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	CDX2	Q99626	313 aa	Predicted RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	DAZ3	Q9NR90	486 aa	Known RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	SOX21	Q9Y651	276 aa	Predicted RBP	3.4	□□□□□ -1.87
SS18-223	ENST00000583595	LRP4	O75096	1905 aa		3.4	□□□□□ -1.87
SS18-223	ENST00000583595	DOCK6	Q96HP0	2047 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	ATG2A	Q2TAZ0	1938 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	TRAV36DV7	A0A075B6V5	113 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	IGHV3-74	A0A0B4J1X5	117 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	C3orf85	A0A1B0GTC6	90 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595		A0A1B0GX51	115 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	IZUMO1R	A6ND01	250 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595		H3BSH0	61 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	CCDC179	H3BU77	68 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	SS18L1	O75177	396 aa	Predicted RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	SRSF10	O75494	262 aa	Known RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	OR7C1	O76099	320 aa	Predicted RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	APOM	O95445	188 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	IFITM1	P13164	125 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	SSR2	P43308	183 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	LINC01545	Q5VT33	79 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	OTP	Q5XKR4	325 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	SLC48A1	Q6P1K1	146 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	C11orf53	Q8IXP5	236 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	H1FX	Q92522	213 aa	Known RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	RAB37	Q96AX2	223 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	OR4C12	Q96R67	309 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	C20orf78	Q9BR46	151 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	SPANXD	Q9BXN6	97 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	MRPL32	Q9BYC8	188 aa	Known RBP	3.39	□□□□□ -1.87

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