RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PKHD1P08F94 4074 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 S100A11P31949 105 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 TAS2R60P59551 318 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 ASAH1Q13510 395 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 C15orf53Q8NAA6 179 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 SLC39A9Q9NUM3 307 aa14.42□□□□□ -0.1
SHMT1-209ENST00000582653 RPL29P47914 159 aaKnown RBP14.41□□□□□ -0.1
SHMT1-209ENST00000582653 LINC00299Q6ZSB3 139 aa14.41□□□□□ -0.1
SHMT1-209ENST00000582653 OR1L4Q8NGR5 311 aa14.41□□□□□ -0.1
SHMT1-209ENST00000582653 OR10J6PQ8NGY7 276 aa14.41□□□□□ -0.1
SHMT1-209ENST00000582653 ZNF586Q9NXT0 402 aa14.41□□□□□ -0.1
SHMT1-209ENST00000582653 PXMP4Q9Y6I8 212 aa14.41□□□□□ -0.1
SHMT1-209ENST00000582653 SIX6O95475 246 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 MED14OSP0DP75 135 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 FGF7P21781 194 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 STX12Q86Y82 276 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 S100ZQ8WXG8 99 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 PFDN5Q99471 154 aa14.4□□□□□ -0.1
SHMT1-209ENST00000582653 GPN1Q9HCN4 374 aaPredicted RBP14.4□□□□□ -0.1
SHMT1-209ENST00000582653 F5H768 121 aa14.39□□□□□ -0.11
SHMT1-209ENST00000582653 J3KRW8 73 aa14.39□□□□□ -0.11
SHMT1-209ENST00000582653 FAM3BP58499 235 aaPredicted RBP14.39□□□□□ -0.11
SHMT1-209ENST00000582653 HBG1P69891 147 aa14.39□□□□□ -0.11
SHMT1-209ENST00000582653 HBG2P69892 147 aa14.39□□□□□ -0.11
SHMT1-209ENST00000582653 C16orf74Q96GX8 76 aa14.39□□□□□ -0.11
SHMT1-209ENST00000582653 CT45A10P0DMU9 189 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 NHLH2Q02577 135 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 GUK1Q16774 197 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 ATP6V1FQ16864 119 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 SOHLH1Q5JUK2 328 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 GFI1BQ5VTD9 330 aa14.38□□□□□ -0.11
SHMT1-209ENST00000582653 NOP10Q9NPE3 64 aaKnown RBP14.38□□□□□ -0.11
SHMT1-209ENST00000582653 TIMM8BQ9Y5J9 83 aaPredicted RBP14.38□□□□□ -0.11
SHMT1-209ENST00000582653 DYNC1H1Q14204 4646 aaKnown RBP14.38□□□□□ -0.11
SHMT1-209ENST00000582653 CBY3A6NI87 242 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 H7BYZ3 331 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 IFITM3Q01628 133 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 GCSAMLQ5JQS6 135 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 ENKURQ8TC29 256 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 RNASE8Q8TDE3 154 aaKnown RBP14.37□□□□□ -0.11
SHMT1-209ENST00000582653 CHAC2Q8WUX2 184 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 DNAH11Q96DT5 4516 aa14.37□□□□□ -0.11
SHMT1-209ENST00000582653 UPK1BO75841 260 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 ATP5G1P05496 136 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 ATP5G3P48201 142 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 C1orf134Q5TEV5 83 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 ZNF493Q6ZR52 646 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 THAP6Q8TBB0 222 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 TMEM263Q8WUH6 116 aaKnown RBP14.36□□□□□ -0.11
SHMT1-209ENST00000582653 OR5AC2Q9NZP5 309 aa14.36□□□□□ -0.11
SHMT1-209ENST00000582653 TRBV19A0A075B6N1 114 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 NPIPB6E9PJ23 425 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 M0R3E3 92 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 NUDT3O95989 172 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 PYYP10082 97 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 LRRC37A5PQ49AS3 106 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 C20orf144Q9BQM9 153 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 ATG101Q9BSB4 218 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 NPCDR1Q9BY65 106 aa14.35□□□□□ -0.11
SHMT1-209ENST00000582653 TRAV12-3A0A0B4J271 114 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 H0YIZ8 118 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 NDUFB4O95168 129 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 ERCC8Q13216 396 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 OR5C1Q8NGR4 320 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 TMEM14CQ9P0S9 112 aa14.34□□□□□ -0.11
SHMT1-209ENST00000582653 A6NHS1 94 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 ZNF253O75346 499 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 RLN2P04090 185 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 HIST1H1EP10412 219 aaKnown RBP14.33□□□□□ -0.12
SHMT1-209ENST00000582653 LEPP41159 167 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 CCDC28AQ8IWP9 274 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 BLNKQ8WV28 456 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 TIMM9Q9Y5J7 89 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 NACAE9PAV3 2078 aa14.33□□□□□ -0.12
SHMT1-209ENST00000582653 E5RGE8 158 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 MPDU1O75352 247 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 EXOC3-AS1Q8N2X6 119 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 ODF3Q96PU9 254 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 SLC25A2Q9BXI2 301 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 NMES1Q9C002 83 aa14.32□□□□□ -0.12
SHMT1-209ENST00000582653 INMT-MINDY4F8WBC2 141 aa14.31□□□□□ -0.12
SHMT1-209ENST00000582653 CLINT1Q14677 625 aa14.31□□□□□ -0.12
SHMT1-209ENST00000582653 MIR17HGQ75NE6 70 aa14.31□□□□□ -0.12
SHMT1-209ENST00000582653 RNF141Q8WVD5 230 aa14.31□□□□□ -0.12
SHMT1-209ENST00000582653 MRPL53Q96EL3 112 aaKnown RBP14.31□□□□□ -0.12
SHMT1-209ENST00000582653 SLC25A31Q9H0C2 315 aa14.31□□□□□ -0.12
SHMT1-209ENST00000582653 GAGE12BA1L429 117 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 GAGE7O76087 117 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 GAGE12FP0CL80 117 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 GAGE12GP0CL81 117 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 GAGE12IP0CL82 117 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 CCL18P55774 89 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 ZNRF2Q8NHG8 242 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 FAM167A-AS1Q96KT0 104 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 AGPAT4-IT1Q9H0P7 198 aa14.3□□□□□ -0.12
SHMT1-209ENST00000582653 PRAF2O60831 178 aa14.29□□□□□ -0.12
SHMT1-209ENST00000582653 H2BFSP57053 126 aa14.29□□□□□ -0.12
SHMT1-209ENST00000582653 OR5I1Q13606 314 aa14.29□□□□□ -0.12
SHMT1-209ENST00000582653 LINC00612Q8N6U2 182 aa14.29□□□□□ -0.12
SHMT1-209ENST00000582653 NBDYA0A0U1RRE5 68 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms