RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMEM14CQ9P0S9 112 aa0.66□□□□□ -2.3
SMCHD1-204ENST00000581226 XIRP1Q702N8 1843 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-204ENST00000581226 OR2T8A6NH00 312 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 PPP5D1E7EU14 171 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 GPR31O00270 319 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 TRIQKQ629K1 86 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 GLIPR1L1Q6UWM5 242 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 KRTAP19-3Q7Z4W3 81 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 LINC00269Q8N2A0 174 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 FAM24BQ8N5W8 94 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 CCL4L1Q8NHW4 92 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 PCBD2Q9H0N5 130 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 USP54Q70EL1 1684 aa0.65□□□□□ -2.31
SMCHD1-204ENST00000581226 TRDV1A0A1B0GX56 115 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 A0A1W2PRE2 83 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 MAP1LC3B2A6NCE7 125 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 NCR3O14931 201 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 RPL35P42766 123 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 DCUN1D2Q6PH85 259 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 HAGHLQ6PII5 290 aaPredicted RBP0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 FOXI2Q6ZQN5 318 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 ZCCHC23Q6ZST2 131 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 LRRC18Q8N456 261 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 FAM216BQ8N7L0 139 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 DIRC1Q969H9 104 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 BORCS8Q96FH0 119 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 MAP1LC3BQ9GZQ8 125 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 NUBP2Q9Y5Y2 271 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 ANK1P16157 1881 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 TRPM7Q96QT4 1865 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 KIAA1549LQ6ZVL6 1849 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 ERBINQ96RT1 1412 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 TRAPPC8Q9Y2L5 1435 aa0.64□□□□□ -2.31
SMCHD1-204ENST00000581226 NINQ8N4C6 2090 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 APCP25054 2843 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 CTTNBP2Q8WZ74 1663 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 CST7O76096 145 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 FABP1P07148 127 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 MIR22HGQ0VDD5 57 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 ANGPTL5Q86XS5 388 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 SBSPONQ8IVN8 264 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 PLPP5Q8NEB5 264 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 NIT2Q9NQR4 276 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 MED11Q9P086 117 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 NAT8BQ9UHF3 227 aa0.63□□□□□ -2.31
SMCHD1-204ENST00000581226 MYH1P12882 1939 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 H3BRM9 83 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 GABARAPH6UMI1 98 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 IFNA4P05014 189 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 TEN1Q86WV5 123 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 GKN2Q86XP6 184 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 STX12Q86Y82 276 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 IFT20Q8IY31 132 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 DYDC1Q8WWB3 177 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 RMND5BQ96G75 393 aaPredicted RBP0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 TMEM138Q9NPI0 162 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 TNFSF18Q9UNG2 199 aa0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 AHNAKQ09666 5890 aaKnown RBP0.62□□□□□ -2.31
SMCHD1-204ENST00000581226 JMJD7-PLA2G4BH0Y9G9 81 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 PPYP01298 95 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 IGLV3-1P01715 115 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 HRCT1Q6UXD1 115 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 OR10AG1Q8NH19 301 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 LIMD2Q9BT23 127 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 KIAA1107Q9UPP5 1409 aa0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 TCOF1Q13428 1488 aaKnown RBP0.61□□□□□ -2.31
SMCHD1-204ENST00000581226 KNTC1P50748 2209 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 H3BQV1 296 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 S100A11P31949 105 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 VBP1P61758 197 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 WFDC10AQ9H1F0 79 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 BCL9O00512 1426 aa0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.6□□□□□ -2.31
SMCHD1-204ENST00000581226 IGLV3-32A0A0A0MS00 114 aa0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 KPNA4O00629 521 aaPredicted RBP0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 IGHV3-33P01772 117 aa0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 CD14P08571 375 aa0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 RPL7P18124 248 aaKnown RBP0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 THEM6Q8WUY1 208 aa0.59□□□□□ -2.31
SMCHD1-204ENST00000581226 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
SMCHD1-204ENST00000581226 MEGF8Q7Z7M0 2845 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 FAM135BQ49AJ0 1406 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 PGRMC1O00264 195 aaKnown RBP0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 MT-ND6P03923 174 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 BCL2P10415 239 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 FABP4P15090 132 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 POLR2HP52434 150 aaKnown RBP0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 CST11Q9H112 138 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 LAMTOR3Q9UHA4 124 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 MED31Q9Y3C7 131 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 FRAS1Q86XX4 4008 aa0.58□□□□□ -2.32
SMCHD1-204ENST00000581226 LYRM1O43325 122 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 FABP2P12104 132 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 RPS3P23396 243 aaKnown RBP eCLIP0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 DIAPH2-AS1Q14236 149 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 OR10AC1Q8NH08 325 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 ZNF431Q8TF32 576 aaPredicted RBP0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 OR4C12Q96R67 309 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 MDN1Q9NU22 5596 aa0.57□□□□□ -2.32
SMCHD1-204ENST00000581226 DLC1Q96QB1 1528 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms