RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 BAP18Q8IXM2 172 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 ARL6IP6Q8N6S5 226 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 RXFP4Q8TDU9 374 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 RAB24Q969Q5 203 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 TMEM167BQ9NRX6 74 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 PPP1R14DQ9NXH3 145 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 RFNGQ9Y644 331 aa7□□□□□ -1.29
CCDC40-214ENST00000575431 CTXND1A0A1B0GTU2 59 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 HLA-DMBP28068 263 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 TSPOP30536 169 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 CSN1S1P47710 185 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 HIST1H1AQ02539 215 aaPredicted RBP6.99□□□□□ -1.29
CCDC40-214ENST00000575431 ICAM4Q14773 271 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 LGALSLQ3ZCW2 172 aaPredicted RBP6.99□□□□□ -1.29
CCDC40-214ENST00000575431 ZFP69Q49AA0 526 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 DPPA3Q6W0C5 159 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 IL17DQ8TAD2 202 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 STOML3Q8TAV4 291 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 ZNF503Q96F45 646 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 LINC00477Q96M19 166 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 RARRES2Q99969 163 aa6.99□□□□□ -1.29
CCDC40-214ENST00000575431 SMIM9A6NGZ8 99 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 IGKV3-20P01619 116 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 GIG44P09565 113 aaPredicted RBP6.98□□□□□ -1.29
CCDC40-214ENST00000575431 ARL14EPLP0DKL9 152 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 DEFB1P60022 68 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 RANP62826 216 aaKnown RBP6.98□□□□□ -1.29
CCDC40-214ENST00000575431 AMTNQ6UX39 209 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 CSNK1G2-AS1Q8NCQ2 148 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 OR11H2Q8NH07 326 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 CMTM2Q8TAZ6 248 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 SUN5Q8TC36 379 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 ODF3Q96PU9 254 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 Q9H3A6 140 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 EDA2RQ9HAV5 297 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 RETNQ9HD89 108 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 XCL2Q9UBD3 114 aa6.98□□□□□ -1.29
CCDC40-214ENST00000575431 A0A1B0GVG6 124 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 RBAKDNA6NC62 111 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 ZNF705FA8MVS1 300 aaPredicted RBP6.97□□□□□ -1.29
CCDC40-214ENST00000575431 ZNF705EA8MWA4 302 aaPredicted RBP6.97□□□□□ -1.29
CCDC40-214ENST00000575431 BOLA2-SMG1P6H3BVE0 249 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 M0R3E3 92 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 HMGB3O15347 200 aaKnown RBP6.97□□□□□ -1.29
CCDC40-214ENST00000575431 SLC25A5P05141 298 aaKnown RBP6.97□□□□□ -1.29
CCDC40-214ENST00000575431 MIFP14174 115 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 GCHFRP30047 84 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 CDKN1BP46527 198 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 RAB5CP51148 216 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 SLC51BQ86UW2 128 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 EXOC3-AS1Q8N2X6 119 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 PHYHIPLQ96FC7 376 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 IGF2BP2-AS1Q96M15 143 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 NEU1Q99519 415 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 C20orf144Q9BQM9 153 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 NKX6-2Q9C056 277 aaPredicted RBP6.97□□□□□ -1.29
CCDC40-214ENST00000575431 SLC35B3Q9H1N7 401 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 OTORQ9NRC9 128 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 GOLT1BQ9Y3E0 138 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 AGRNO00468 2067 aa6.97□□□□□ -1.29
CCDC40-214ENST00000575431 DNAH3Q8TD57 4116 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 TRBV7-9A0A0J9YWB2 115 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 SERTM2A0A1B0GWG4 89 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 PGPA6NDG6 321 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 NPIPB6E9PJ23 425 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 INSP01308 110 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 NMBP08949 121 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF705DP0CH99 300 aaPredicted RBP6.96□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF705BP0CI00 300 aaPredicted RBP6.96□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF705AQ6ZN79 300 aaPredicted RBP6.96□□□□□ -1.3
CCDC40-214ENST00000575431 C9orf47Q6ZRZ4 202 aa6.96□□□□□ -1.3
CCDC40-214ENST00000575431 A0A1W2PRE2 83 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 MAP1LC3B2A6NCE7 125 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 PRAC2D3DTV9 90 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TEX46H3BTG2 121 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 K7EQM0 130 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 LEPP41159 167 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF726P1Q15940 193 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 SPINK13Q1W4C9 94 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TMEM78Q5T7P6 136 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TMEM256Q8N2U0 113 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 C9orf62Q8N4C0 152 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 C5orf17Q8NAS9 161 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TMED6Q8WW62 240 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 MBD3L1Q8WWY6 194 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TMEM208Q9BTX3 173 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 MAP1LC3BQ9GZQ8 125 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 C11orf68Q9H3H3 251 aaKnown RBP6.95□□□□□ -1.3
CCDC40-214ENST00000575431 LENEPQ9Y5L5 61 aa6.95□□□□□ -1.3
CCDC40-214ENST00000575431 TMEM189A5PLL7 270 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 FBLL1A6NHQ2 334 aaKnown RBP6.94□□□□□ -1.3
CCDC40-214ENST00000575431 DIRC3C9JPN6 131 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 C3orf84H3BNL1 204 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 EIF3GO75821 320 aaKnown RBP eCLIP6.94□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF138P52744 262 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 FXYD7P58549 80 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 CD300CQ08708 224 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 IQCF2Q8IXL9 164 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 FAM213BQ8TBF2 198 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 AGPAT4-IT1Q9H0P7 198 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms