RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PLSCR3Q9NRY6 295 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 GSKIPQ9P0R6 139 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 IGLV4-3A0A075B6K6 122 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 IGKV1-6A0A0C4DH72 117 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 FAM25AB3EWG3 89 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 FAM25CB3EWG5 89 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 FAM25GB3EWG6 89 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 PSPHP1O15172 72 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 CREBL2O60519 120 aaPredicted RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 GABARAPO95166 117 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 NDUFA3O95167 84 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 HLA-DQB1P01920 261 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 CXCL3P19876 107 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 NFYAP23511 347 aaPredicted RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 BTCP35070 178 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 LINC01547P58512 204 aaPredicted RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 TAS2R46P59540 309 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 HSPE1P61604 102 aaKnown RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 NCS1P62166 190 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 VMA21Q3ZAQ7 101 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 OR2B11Q5JQS5 317 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 LCN12Q6JVE5 192 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 ZNF329Q86UD4 541 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 EIF4E3Q8N5X7 224 aaKnown RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 TCTEX1D1Q8N7M0 179 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 OR2K2Q8NGT1 345 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 OR2G3Q8NGZ4 309 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 RAB2BQ8WUD1 216 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 ACY3Q96HD9 319 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 DIRAS2Q96HU8 199 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 HSD17B10Q99714 261 aaKnown RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 SDF2L1Q9HCN8 221 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 METTL1Q9UBP6 276 aaKnown RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 YTHDF2Q9Y5A9 579 aaKnown RBP4.48□□□□□ -1.69
VPS53-212ENST00000572259 VWFP04275 2813 aa4.48□□□□□ -1.69
VPS53-212ENST00000572259 TRAV41A0A0B4J266 112 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 IGHV3-16A0A0C4DH30 117 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 PMS2P5A8MQ11 134 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 J3QRK9 145 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 RGS5O15539 181 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 PDE6DO43924 150 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 CCNKO75909 580 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 DUS4LO95620 317 aaKnown RBP4.47□□□□□ -1.69
VPS53-212ENST00000572259 HRASP01112 189 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 REG1AP05451 166 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 TGFBR1P36897 503 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 TMBIM6P55061 237 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 TAS2R19P59542 299 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 TAS2R20P59543 309 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 CATR1Q13166 79 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 MSMO1Q15800 293 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 LPCAT3Q6P1A2 487 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 TMUB2Q71RG4 321 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 CSNK1G2-AS1Q8NCQ2 148 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 OR5H2Q8NGV7 314 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 OR4S2Q8NH73 311 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 VSTM2AQ8TAG5 236 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 CYYR1Q96J86 154 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 PFDN5Q99471 154 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 MARVELD1Q9BSK0 173 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 PARP12Q9H0J9 701 aaKnown RBP4.47□□□□□ -1.69
VPS53-212ENST00000572259 PARP11Q9NR21 331 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 LINC00527Q9UJ94 153 aa4.47□□□□□ -1.69
VPS53-212ENST00000572259 CMYA5Q8N3K9 4069 aa4.46□□□□□ -1.69
VPS53-212ENST00000572259 A0A0J9YXV3 536 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 CCDC160A6NGH7 325 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 ZNF98A6NK75 572 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 CRYZL1O95825 349 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 PPYP01298 95 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 IGKV1-16P04430 117 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 CXCL2P19875 107 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 CNTFRP26992 372 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 RHOBP62745 196 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 MRPS10P82664 201 aaKnown RBP4.46□□□□□ -1.7
VPS53-212ENST00000572259 PMAIP1Q13794 54 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 FXYD3Q14802 87 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 IAH1Q2TAA2 248 aaPredicted RBP4.46□□□□□ -1.7
VPS53-212ENST00000572259 TMEM128Q5BJH2 165 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 ZNF506Q5JVG8 444 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 UNQ5815/PRO19632Q6UWF5 114 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 TOMM20LQ6UXN7 152 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 SCGB1D4Q6XE38 83 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 ZNF695Q8IW36 515 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 KLHL30-AS1Q8NEE0 82 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 HSPB9Q9BQS6 159 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 SLC25A31Q9H0C2 315 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 WSB1Q9Y6I7 421 aa4.46□□□□□ -1.7
VPS53-212ENST00000572259 A0A1B0GV50 99 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 PGPA6NDG6 321 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 MEIS3P1A6NDR6 274 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 C8orf87E5RJ46 101 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 SLC17A3O00476 420 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 PFDN1O60925 122 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 OR2A4O95047 310 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 CA2P00918 260 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 TRBV12-3P01733 135 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 PMP2P02689 132 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 ELK1P19419 428 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 PSMB8P28062 276 aa4.45□□□□□ -1.7
VPS53-212ENST00000572259 ZNF138P52744 262 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms