RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 USMG5Q96IX5 58 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 SIGMAR1Q99720 223 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 YAE1D1Q9NRH1 226 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 FAM110DQ8TAY7 271 aaPredicted RBP12.29□□□□□ -0.44
CIITA-204ENST00000570546 FCN3O75636 299 aa12.28□□□□□ -0.44
CIITA-204ENST00000570546 CHAC1Q9BUX1 264 aa12.28□□□□□ -0.44
CIITA-204ENST00000570546 RCHY1Q96PM5 261 aa12.28□□□□□ -0.44
CIITA-204ENST00000570546 ZNF688P0C7X2 276 aa12.28□□□□□ -0.44
CIITA-204ENST00000570546 C10orf126Q8N4M7 172 aa12.28□□□□□ -0.44
CIITA-204ENST00000570546 VCYO14598 125 aa12.27□□□□□ -0.44
CIITA-204ENST00000570546 ATP6V0E1O15342 81 aa12.27□□□□□ -0.44
CIITA-204ENST00000570546 TEX43Q6ZNM6 134 aa12.27□□□□□ -0.44
CIITA-204ENST00000570546 BPESC1Q9GZL8 116 aa12.27□□□□□ -0.45
CIITA-204ENST00000570546 A8MWV9 139 aa12.27□□□□□ -0.45
CIITA-204ENST00000570546 PAX2Q02962 417 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 IL17RELQ6ZVW7 336 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 RHPN1-AS1Q9BWJ2 59 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 DSCR9P59020 149 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 IGHV3-73A0A0B4J1V6 119 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 ZNF876PQ49A33 203 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 ERG28Q9UKR5 140 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 ZNF407Q9C0G0 2248 aa12.26□□□□□ -0.45
CIITA-204ENST00000570546 IGLL1P15814 213 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 ZC2HC1AQ96GY0 325 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 PYGO2Q9BRQ0 406 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 MRPL51Q4U2R6 128 aaKnown RBP12.25□□□□□ -0.45
CIITA-204ENST00000570546 LTBP2Q14767 1821 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 YLPM1P49750 1951 aaKnown RBP12.25□□□□□ -0.45
CIITA-204ENST00000570546 TRBV7-9A0A0J9YWB2 115 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 GAGE12BA1L429 117 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 IGLC1P0CG04 106 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 GNLYP22749 145 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 UBE2E1P51965 193 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 SPRNQ5BIV9 151 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 TMEM238C9JI98 176 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 TDGF1P13385 188 aa12.25□□□□□ -0.45
CIITA-204ENST00000570546 LTAP01374 205 aa12.24□□□□□ -0.45
CIITA-204ENST00000570546 PRR25Q96S07 402 aa12.24□□□□□ -0.45
CIITA-204ENST00000570546 B4DSR2 109 aa12.24□□□□□ -0.45
CIITA-204ENST00000570546 PLEKHB2Q96CS7 222 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 A0A087WWL8 130 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 ESDP10768 282 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 RUSC1-AS1Q66K80 236 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 Q8N8P6 123 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 NPSP0C0P6 89 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 COA6Q5JTJ3 125 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 RBMY1BA6NDE4 496 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 RBMY1EA6NEQ0 496 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 RBMY1DP0C7P1 496 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 RBMY1A1P0DJD3 496 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 RBMY1CP0DJD4 496 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 DAZ1Q9NQZ3 744 aaKnown RBP12.23□□□□□ -0.45
CIITA-204ENST00000570546 CEP250Q9BV73 2442 aa12.23□□□□□ -0.45
CIITA-204ENST00000570546 LHBP01229 141 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 K7ENP7 123 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 C8orf31Q8N9H6 132 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 WIPF2Q8TF74 440 aaPredicted RBP12.22□□□□□ -0.45
CIITA-204ENST00000570546 C2orf16Q68DN1 1984 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.22□□□□□ -0.45
CIITA-204ENST00000570546 OVOL3O00110 214 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 KAAG1Q9UBP8 84 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 SIGLEC8Q9NYZ4 499 aa12.22□□□□□ -0.45
CIITA-204ENST00000570546 TRAV8-4A0A0B4J246 113 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 G3V318 75 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 M0R2P5 195 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 IGLV2-14P01704 120 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 DOCK11Q5JSL3 2073 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 IGLC7A0M8Q6 106 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 K7EM74 188 aa12.21□□□□□ -0.45
CIITA-204ENST00000570546 COX8AP10176 69 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 PRSS57Q6UWY2 283 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 C11orf1Q9H5F2 150 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 A0A0U1RRA0 63 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 KLF5Q13887 457 aaPredicted RBP12.2□□□□□ -0.46
CIITA-204ENST00000570546 PIP4P2Q8N4L2 257 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 DLX4Q92988 240 aaPredicted RBP12.2□□□□□ -0.46
CIITA-204ENST00000570546 PGPEP1Q9NXJ5 209 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 TRGV4A0A0C4DH28 118 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 NPC2P61916 151 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 CFAP161Q6P656 301 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 ADARB2-AS1A8MUL3 147 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 ZNF415Q09FC8 603 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 LGALS9BQ3B8N2 356 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 TMEM95Q3KNT9 176 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 MAJINQ3KP22 176 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 LGALS9CQ6DKI2 356 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 C8orf86Q6ZUL3 223 aa12.2□□□□□ -0.46
CIITA-204ENST00000570546 IGHV2-70DA0A0C4DH43 119 aa12.19□□□□□ -0.46
CIITA-204ENST00000570546 C11orf44Q8N8P7 122 aa12.19□□□□□ -0.46
CIITA-204ENST00000570546 CTSZQ9UBR2 303 aa12.19□□□□□ -0.46
CIITA-204ENST00000570546 NCOR1O75376 2440 aa12.19□□□□□ -0.46
CIITA-204ENST00000570546 C17orf77Q96MU5 243 aa12.19□□□□□ -0.46
CIITA-204ENST00000570546 NPYP01303 97 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 GAGE1Q13065 139 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 PIP4P1Q86T03 277 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 ZNF491Q8N8L2 437 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 TRAV26-2A0A0B4J265 109 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 VGLL1Q99990 258 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 KIR2DL5BA0A0G2JN68 375 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 KIR2DL5BA0A0G2JPC4 375 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms