RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SAV1Q9H4B6 383 aaPredicted RBP6.82□□□□□ -1.32
VPS35-211ENST00000569950 YTHDF2Q9Y5A9 579 aaKnown RBP6.82□□□□□ -1.32
VPS35-211ENST00000569950 HLA-DRB4X5D2U9 266 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 CXorf1O96002 111 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 ZNF705DP0CH99 300 aaPredicted RBP6.81□□□□□ -1.32
VPS35-211ENST00000569950 ZNF705BP0CI00 300 aaPredicted RBP6.81□□□□□ -1.32
VPS35-211ENST00000569950 ICAM4Q14773 271 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 FOXI2Q6ZQN5 318 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 CCDC28AQ8IWP9 274 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 LYPD6BQ8NI32 183 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 LINC00052Q96N35 136 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 CLUHP3Q96NS8 147 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 Q9H3A6 140 aa6.81□□□□□ -1.32
VPS35-211ENST00000569950 DNAH7Q8WXX0 4024 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 C4BPBP20851 252 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 ID1P41134 155 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 RAB5CP51148 216 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 CMC4P56277 68 aaPredicted RBP6.8□□□□□ -1.32
VPS35-211ENST00000569950 SNRPD3P62318 126 aaKnown RBP6.8□□□□□ -1.32
VPS35-211ENST00000569950 RANP62826 216 aaKnown RBP6.8□□□□□ -1.32
VPS35-211ENST00000569950 HAGHQ16775 308 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 ACTL10Q5JWF8 245 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 SAMD13Q5VXD3 122 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 TEX261Q6UWH6 196 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 SBSPONQ8IVN8 264 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 LYPD1Q8N2G4 141 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 OR8A1Q8NGG7 326 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 MRAPQ8TCY5 172 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 SFT2D1Q8WV19 159 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 RPUSD4Q96CM3 377 aaKnown RBP6.8□□□□□ -1.32
VPS35-211ENST00000569950 MRPL53Q96EL3 112 aaKnown RBP6.8□□□□□ -1.32
VPS35-211ENST00000569950 FAM19A4Q96LR4 140 aa6.8□□□□□ -1.32
VPS35-211ENST00000569950 FAM74A7A6NL05 159 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 NPIPB6E9PJ23 425 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 H2AFB1P0C5Y9 115 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 RPL35AP18077 110 aaKnown RBP6.79□□□□□ -1.32
VPS35-211ENST00000569950 CNN1P51911 297 aaKnown RBP6.79□□□□□ -1.32
VPS35-211ENST00000569950 PSG9Q00887 426 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 KIR3DS1Q14943 382 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 EIF5AL1Q6IS14 154 aaKnown RBP6.79□□□□□ -1.32
VPS35-211ENST00000569950 CSNK1G2-AS1Q8NCQ2 148 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 ZNF680Q8NEM1 530 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 OTORQ9NRC9 128 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 TMEM167BQ9NRX6 74 aa6.79□□□□□ -1.32
VPS35-211ENST00000569950 IGKV2-40A0A087WW87 121 aaPredicted RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 A0A1B0GV50 99 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 A0A1W2PRE2 83 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 CRXO43186 299 aaPredicted RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 IGKV2D-40P01614 121 aaPredicted RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 IGLV2-11P01706 119 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 NMBP08949 121 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 RBMY1A1P0DJD3 496 aaKnown RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 RBMY1CP0DJD4 496 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 CT45A10P0DMU9 189 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 GNG5P63218 68 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 ERCC8Q13216 396 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 PMS2P11Q13670 270 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 RBMY1FQ15415 496 aaKnown RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 ZNF738Q8NE65 137 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 PCNPQ8WW12 178 aaKnown RBP6.78□□□□□ -1.32
VPS35-211ENST00000569950 VGLL1Q99990 258 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 B9D2Q9BPU9 175 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 TM2D3Q9BRN9 247 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 AGPAT4-IT1Q9H0P7 198 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 SLC35B3Q9H1N7 401 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 CLEC5AQ9NY25 188 aa6.78□□□□□ -1.32
VPS35-211ENST00000569950 LOC102724200A0A096LPH7 203 aaPredicted RBP6.77□□□□□ -1.33
VPS35-211ENST00000569950 KIR2DL5BA0A0G2JN68 375 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 KIR2DL5BA0A0G2JPC4 375 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 PGPA6NDG6 321 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 ZNF705EA8MWA4 302 aaPredicted RBP6.77□□□□□ -1.33
VPS35-211ENST00000569950 DIRC3C9JPN6 131 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 ATP5G3P48201 142 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 UBE2G2P60604 165 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 DEFB121Q5J5C9 76 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 C9orf47Q6ZRZ4 202 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 KIR2DL5AQ8N109 375 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 ARL6IP6Q8N6S5 226 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 KIR2DL5BQ8NHK3 375 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 TVP23CQ96ET8 276 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 ASCL2Q99929 193 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 RETNQ9HD89 108 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 PRELID1Q9Y255 219 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 ARL2-SNX15V9GYD0 113 aa6.77□□□□□ -1.33
VPS35-211ENST00000569950 TRAV8-1A0A0A6YYK1 113 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 PAGE4O60829 102 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 IGKV3-20P01619 116 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 TCRAP04437 139 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 SUMO1P63165 101 aaKnown RBP6.76□□□□□ -1.33
VPS35-211ENST00000569950 HIST1H1AQ02539 215 aaPredicted RBP6.76□□□□□ -1.33
VPS35-211ENST00000569950 PRR9Q5T870 116 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 ZFAND2AQ8N6M9 145 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 LRRC20Q8TCA0 184 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 TUBA4BQ9H853 241 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 CSMD3Q7Z407 3707 aa6.76□□□□□ -1.33
VPS35-211ENST00000569950 RBAKDNA6NC62 111 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 M0R2Z0 102 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 SLC25A5P05141 298 aaKnown RBP6.75□□□□□ -1.33
VPS35-211ENST00000569950 FXYD7P58549 80 aa6.75□□□□□ -1.33
VPS35-211ENST00000569950 Q6ZQT7 251 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms