RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 FAM120AOSQ5T036 256 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 Q8N976 141 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 C21orf62Q9NYP8 219 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 DKK2Q9UBU2 259 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 PRSS46E5RG02 174 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 ZNF474Q6S9Z5 364 aaPredicted RBP9.13□□□□□ -0.95
CLN3-238ENST00000569430 ZNF492Q9P255 531 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 FABP5P3A8MUU1 101 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 ATP5LO75964 103 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 CT83Q5H943 113 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 AMTNQ6UX39 209 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 GFRA4Q9GZZ7 299 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 CYSLTR1Q9Y271 337 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 TSSC4Q9Y5U2 329 aaPredicted RBP9.13□□□□□ -0.95
CLN3-238ENST00000569430 K7EP34 96 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 GAGE13Q4V321 117 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 LYRM7Q5U5X0 104 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 SCGB3A1Q96QR1 104 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 CHAC1Q9BUX1 264 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 SCRT2Q9NQ03 307 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 SIGLEC9Q9Y336 463 aa9.13□□□□□ -0.95
CLN3-238ENST00000569430 EIF4EBP1Q13541 118 aaPredicted RBP9.12□□□□□ -0.95
CLN3-238ENST00000569430 POU2AF1Q16633 256 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 TMEM158Q8WZ71 300 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 RAB1BQ9H0U4 201 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 TMEM238LA0A1B0GVL6 79 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 A6NJY4 79 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 TIMM23O14925 209 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 C16orf92Q96LL3 132 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 HAX1O00165 279 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 HERVK_113P61574 105 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 BEX4Q9NWD9 120 aaPredicted RBP9.12□□□□□ -0.95
CLN3-238ENST00000569430 C1RLQ9NZP8 487 aa9.12□□□□□ -0.95
CLN3-238ENST00000569430 TRAV40A0A0B4J280 105 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 A0A1W2PPM0 123 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.11□□□□□ -0.95
CLN3-238ENST00000569430 IGLC1P0CG04 106 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 IGHV1-8P0DP01 117 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 FAM104BQ5XKR9 115 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 NEU4Q8WWR8 484 aaPredicted RBP9.11□□□□□ -0.95
CLN3-238ENST00000569430 JMJD8Q96S16 334 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 PHLDA3Q9Y5J5 127 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 MRPL51Q4U2R6 128 aaKnown RBP9.11□□□□□ -0.95
CLN3-238ENST00000569430 NXT2Q9NPJ8 142 aaKnown RBP9.11□□□□□ -0.95
CLN3-238ENST00000569430 RAXQ9Y2V3 346 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 TEX48A0A1B0GUV7 120 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 C22orf46C9J442 243 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 NPYP01303 97 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 HTN1P15515 57 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 SPATA12Q7Z6I5 190 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 TMEM75Q8N9X5 138 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 WFDC12Q8WWY7 111 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 RELNP78509 3460 aa9.11□□□□□ -0.95
CLN3-238ENST00000569430 LTAP01374 205 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 FTH1P19P0C7X4 201 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 MSMPQ1L6U9 139 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 NCKAP5O14513 1909 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 PRSS2P07478 247 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 C1orf159Q96HA4 380 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 IGHV1-3A0A0C4DH29 117 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 H3BMG7 143 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 FAM106CPP0CH98 169 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 AZU1P20160 251 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 DLX6P56179 175 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 FAM106AQ4KMX7 169 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 TMEM170BQ5T4T1 132 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 LINC01545Q5VT33 79 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 DPM3Q9P2X0 92 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 TACC2O95359 2948 aa9.1□□□□□ -0.95
CLN3-238ENST00000569430 PVRIGQ6DKI7 326 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 ZNF833PQ6ZTB9 187 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 RITA1Q96K30 269 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 TRBV19A0A075B6N1 114 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 CD59P13987 128 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 KALRNO60229 2985 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 COL4A2P08572 1712 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 TMEM8BA6NDV4 472 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 TMEM178BH3BS89 294 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 PPBPP02775 128 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 CKS1BP61024 79 aa9.09□□□□□ -0.95
CLN3-238ENST00000569430 LOXL1Q08397 574 aaPredicted RBP9.09□□□□□ -0.95
CLN3-238ENST00000569430 TLN1Q9Y490 2541 aaKnown RBP9.09□□□□□ -0.95
CLN3-238ENST00000569430 LGALS9BQ3B8N2 356 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 LGALS9CQ6DKI2 356 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 CLEC2AQ6UVW9 174 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 LINC01560Q8TB33 94 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 IGFBPL1Q8WX77 278 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 NBR2O15453 112 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 IGLV1-44P01699 117 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 CD300EQ496F6 205 aaPredicted RBP9.08□□□□□ -0.96
CLN3-238ENST00000569430 RNASE6Q93091 150 aaKnown RBP9.08□□□□□ -0.96
CLN3-238ENST00000569430 MBD6Q96DN6 1003 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 CSPG4Q6UVK1 2322 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 SORL1Q92673 2214 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 HOXA3O43365 443 aaPredicted RBP9.08□□□□□ -0.96
CLN3-238ENST00000569430 NDUFS7O75251 213 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 IGHG3P01860 377 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 ERCC8Q13216 396 aa9.08□□□□□ -0.96
CLN3-238ENST00000569430 SH2D6Q7Z4S9 175 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms