RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TTTY13Q9BZ97 58 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 SIGLEC8Q9NYZ4 499 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 HAX1O00165 279 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 ZNF207O43670 478 aaKnown RBP11.47□□□□□ -0.57
VPS35-210ENST00000568784 RHOGP84095 191 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 Q6ZS92 163 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 SH2D1AO60880 128 aa11.46□□□□□ -0.57
VPS35-210ENST00000568784 FSTL3O95633 263 aa11.46□□□□□ -0.57
VPS35-210ENST00000568784 ECSCRQ19T08 205 aa11.46□□□□□ -0.57
VPS35-210ENST00000568784 NUP37Q8NFH4 326 aa11.46□□□□□ -0.57
VPS35-210ENST00000568784 GFRA4Q9GZZ7 299 aa11.46□□□□□ -0.57
VPS35-210ENST00000568784 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.46□□□□□ -0.58
VPS35-210ENST00000568784 K7EMI3 77 aa11.46□□□□□ -0.58
VPS35-210ENST00000568784 CD5LO43866 347 aa11.46□□□□□ -0.58
VPS35-210ENST00000568784 IFI27L1Q96BM0 104 aa11.46□□□□□ -0.58
VPS35-210ENST00000568784 MS4A6AQ9H2W1 248 aa11.46□□□□□ -0.58
VPS35-210ENST00000568784 LINC00574Q9H8X3 128 aa11.46□□□□□ -0.58
VPS35-210ENST00000568784 THBDP07204 575 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 PCP2Q8IVA1 136 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 SHANK2-AS3Q9BTD1 123 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 KLK15Q9H2R5 256 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 COX8AP10176 69 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 FER1L6-AS1Q8NA97 138 aa11.45□□□□□ -0.58
VPS35-210ENST00000568784 CRYGCP07315 174 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 MSRB1Q9NZV6 116 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 HBDP02042 147 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 MFAP4P55083 255 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 KIR3DS1Q14943 382 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 IGKV3-7A0A075B6H7 116 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 TEX22C9J3V5 150 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 CDKN1BP46527 198 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 SMIM12Q96EX1 92 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 DKK2Q9UBU2 259 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 NPYP01303 97 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 S100A7AQ86SG5 101 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 LINC00311Q8N616 119 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 ZNF491Q8N8L2 437 aa11.44□□□□□ -0.58
VPS35-210ENST00000568784 TMEM160Q9NX00 188 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 MRPL51Q4U2R6 128 aaKnown RBP11.43□□□□□ -0.58
VPS35-210ENST00000568784 LINC01545Q5VT33 79 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 SIGLEC15Q6ZMC9 328 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 DEFB104AQ8WTQ1 72 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 C21orf62Q9NYP8 219 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 SPCS1Q9Y6A9 102 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 AKAP13Q12802 2813 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 K7EP13 123 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 NBR2O15453 112 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 ERCC8Q13216 396 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 DOPEY2Q9Y3R5 2298 aa11.43□□□□□ -0.58
VPS35-210ENST00000568784 NCOR2Q9Y618 2525 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 LEPP41159 167 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 CRIP1P50238 77 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 RBPJQ06330 500 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 OR2K2Q8NGT1 345 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 FOXC2Q99958 501 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 A0A0G2JLM5 398 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 I3L2K1 104 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 IGLV2-11P01706 119 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 DPM3Q9P2X0 92 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 K7EIM0 57 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 GATA1P15976 413 aaPredicted RBP11.42□□□□□ -0.58
VPS35-210ENST00000568784 APOBEC3AP31941 199 aaPredicted RBP11.42□□□□□ -0.58
VPS35-210ENST00000568784 SCGB2A2Q13296 93 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 VGLL1Q99990 258 aa11.42□□□□□ -0.58
VPS35-210ENST00000568784 FAM104BQ5XKR9 115 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 GTSCR1Q86UQ5 136 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 MAP1LC3AQ9H492 121 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 CSPG4Q6UVK1 2322 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 MAP1AP78559 2803 aaPredicted RBP11.41□□□□□ -0.58
VPS35-210ENST00000568784 INS-IGF2F8WCM5 200 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 PLP1P60201 277 aa11.41□□□□□ -0.58
VPS35-210ENST00000568784 CRXO43186 299 aaPredicted RBP11.4□□□□□ -0.58
VPS35-210ENST00000568784 RPL7P18124 248 aaKnown RBP11.4□□□□□ -0.58
VPS35-210ENST00000568784 RPL11P62913 178 aaKnown RBP11.4□□□□□ -0.58
VPS35-210ENST00000568784 PVRIGQ6DKI7 326 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 RNF182Q8N6D2 247 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 C1RLQ9NZP8 487 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 H3BRN7 92 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 FAM71F2Q6NXP2 309 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 TIMD4Q96H15 378 aa11.4□□□□□ -0.58
VPS35-210ENST00000568784 NHP2Q9NX24 153 aaKnown RBP11.4□□□□□ -0.58
VPS35-210ENST00000568784 EGR2P11161 476 aaPredicted RBP11.4□□□□□ -0.58
VPS35-210ENST00000568784 SCGB2A1O75556 95 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 FABP2P12104 132 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 CEACAM3P40198 252 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 SEC11AP67812 179 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 SMAD7O15105 426 aaKnown RBP11.39□□□□□ -0.59
VPS35-210ENST00000568784 SPRY2O43597 315 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 K7ERJ3 54 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 MRGPRG-AS1Q2M3A8 158 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 Q6AWC8 147 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 MTURNQ8N3F0 131 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 ARPC1AQ92747 370 aa11.39□□□□□ -0.59
VPS35-210ENST00000568784 SORL1Q92673 2214 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 GRNP28799 593 aaKnown RBP11.38□□□□□ -0.59
VPS35-210ENST00000568784 BMI1P35226 326 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 ZNF672Q499Z4 452 aaPredicted RBP11.38□□□□□ -0.59
VPS35-210ENST00000568784 TMEM14CQ9P0S9 112 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 B9A039 149 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 IGLV1-47P01700 117 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms