RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF705AQ6ZN79 300 aaPredicted RBP9.43□□□□□ -0.9
CLK3-224ENST00000568605 PQLC2Q6ZP29 291 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 RNF141Q8WVD5 230 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 NEU1Q99519 415 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 X6R8D5 127 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 TMEM189A5PLL7 270 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 G3V3Q6 166 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 M0R2Z0 102 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 JTBO76095 146 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 OR10J4P0C629 311 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 ZNF705DP0CH99 300 aaPredicted RBP9.42□□□□□ -0.9
CLK3-224ENST00000568605 ZNF705BP0CI00 300 aaPredicted RBP9.42□□□□□ -0.9
CLK3-224ENST00000568605 TSPOP30536 169 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 CDKN1BP46527 198 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 CDC34P49427 236 aaPredicted RBP9.42□□□□□ -0.9
CLK3-224ENST00000568605 RAB2AP61019 212 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 PMS2P11Q13670 270 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 FAM122CQ6P4D5 195 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 OR10G4Q8NGN3 311 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 OR10G9Q8NGN4 311 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 OR10G7Q8NGN6 311 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 C11orf45Q8TAV5 145 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 FXYD5Q96DB9 178 aa9.42□□□□□ -0.9
CLK3-224ENST00000568605 ZNF705FA8MVS1 300 aaPredicted RBP9.41□□□□□ -0.9
CLK3-224ENST00000568605 HBE1P02100 147 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 CSN1S1P47710 185 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 ICAM4Q14773 271 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 FAM74A1Q5RGS3 127 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 RPL7L1Q6DKI1 246 aaKnown RBP9.41□□□□□ -0.9
CLK3-224ENST00000568605 LYPD1Q8N2G4 141 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 TMEM256Q8N2U0 113 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 ODF3Q96PU9 254 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 RFNGQ9Y644 331 aa9.41□□□□□ -0.9
CLK3-224ENST00000568605 TEX48A0A1B0GUV7 120 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 HMSDA8MTL9 139 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 M0R3E3 92 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 DEFB4AO15263 64 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 NDUFB4O95168 129 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 LEPP41159 167 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 RRN3P1Q2M238 152 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 EXOC3-AS1Q8N2X6 119 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 PHYHIPLQ96FC7 376 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 ARPC5LQ9BPX5 153 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 C20orf144Q9BQM9 153 aa9.4□□□□□ -0.9
CLK3-224ENST00000568605 A0A0D9SG52 128 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 KANTRA0A1W2PQU2 76 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 NPIPB6E9PJ23 425 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 SMLR1H3BR10 107 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 TMEM78Q5T7P6 136 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 BAP18Q8IXM2 172 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 ACTR3CQ9C0K3 210 aaPredicted RBP9.39□□□□□ -0.91
CLK3-224ENST00000568605 SH3BGRL3Q9H299 93 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 KLK5Q9Y337 293 aaPredicted RBP9.39□□□□□ -0.91
CLK3-224ENST00000568605 TENM2Q9NT68 2774 aa9.39□□□□□ -0.91
CLK3-224ENST00000568605 TRAV12-2A0A075B6T6 113 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 PRAC2D3DTV9 90 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 CRXO43186 299 aaPredicted RBP9.38□□□□□ -0.91
CLK3-224ENST00000568605 STAG3L2P0CL84 134 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 STAG3L3P0CL85 134 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 RBMY1A1P0DJD3 496 aaKnown RBP9.38□□□□□ -0.91
CLK3-224ENST00000568605 RBMY1CP0DJD4 496 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 ARL14EPLP0DKL9 152 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 RANP62826 216 aaKnown RBP9.38□□□□□ -0.91
CLK3-224ENST00000568605 RBMY1FQ15415 496 aaKnown RBP9.38□□□□□ -0.91
CLK3-224ENST00000568605 AKR1C8PQ5T2L2 129 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 C1orf158Q8N1D5 194 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 KCNRGQ8N5I3 272 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 RPP25LQ8N5L8 163 aaKnown RBP9.38□□□□□ -0.91
CLK3-224ENST00000568605 CMTM2Q8TAZ6 248 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 RXFP4Q8TDU9 374 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 ZNF503Q96F45 646 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 Q9H3A6 140 aa9.38□□□□□ -0.91
CLK3-224ENST00000568605 LOC102723971A0A1B0GUV8 181 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 C11orf94C9JXX5 98 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 PFDN1O60925 122 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 CXorf1O96002 111 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 EIF5AP63241 154 aaKnown RBP9.37□□□□□ -0.91
CLK3-224ENST00000568605 C9orf47Q6ZRZ4 202 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 RAB24Q969Q5 203 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 LINC00477Q96M19 166 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 OTORQ9NRC9 128 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 TMEM167BQ9NRX6 74 aa9.37□□□□□ -0.91
CLK3-224ENST00000568605 CSMD3Q7Z407 3707 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 CTXND1A0A1B0GTU2 59 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 RBAKDNA6NC62 111 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 H7BYZ3 331 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 HMGB3O15347 200 aaKnown RBP9.36□□□□□ -0.91
CLK3-224ENST00000568605 BCL2L11O43521 198 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 SLC25A5P05141 298 aaKnown RBP9.36□□□□□ -0.91
CLK3-224ENST00000568605 PRB4P10163 310 aaPredicted RBP9.36□□□□□ -0.91
CLK3-224ENST00000568605 NANOS2P60321 138 aaKnown RBP9.36□□□□□ -0.91
CLK3-224ENST00000568605 Q6ZNX1 250 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 PHLDA1Q8WV24 401 aaPredicted RBP9.36□□□□□ -0.91
CLK3-224ENST00000568605 LINC01587Q99440 93 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 NIPSNAP3BQ9BS92 247 aa9.36□□□□□ -0.91
CLK3-224ENST00000568605 IGKV2-40A0A087WW87 121 aaPredicted RBP9.35□□□□□ -0.91
CLK3-224ENST00000568605 IGKV2D-40P01614 121 aaPredicted RBP9.35□□□□□ -0.91
CLK3-224ENST00000568605 SPART-AS1P0CW21 52 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 EMP1P54849 157 aa9.35□□□□□ -0.91
CLK3-224ENST00000568605 TAS2R60P59551 318 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms