RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 ZNF767PQ75MW2 155 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 GTSCR1Q86UQ5 136 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 EXOC3-AS1Q8N2X6 119 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 RNF182Q8N6D2 247 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 PCNPQ8WW12 178 aaKnown RBP6.29□□□□□ -1.4
SF3B3-212ENST00000568539 C20orf173Q96LM9 149 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 FAM110AQ9BQ89 295 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 Q9H3A6 140 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 MAP6D1Q9H9H5 199 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 C19orf73Q9NVV2 129 aa6.29□□□□□ -1.4
SF3B3-212ENST00000568539 YTHDF2Q9Y5A9 579 aaKnown RBP6.29□□□□□ -1.4
SF3B3-212ENST00000568539 EPPK1P58107 5090 aaKnown RBP6.28□□□□□ -1.4
SF3B3-212ENST00000568539 A0A1W2PRE2 83 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 GGTLC3B5MD39 225 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 CMC4P56277 68 aaPredicted RBP6.28□□□□□ -1.4
SF3B3-212ENST00000568539 DEFB131AP59861 70 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 UBE2G2P60604 165 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 PMS2P11Q13670 270 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 ICAM4Q14773 271 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 PSG3Q16557 428 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 Q8N1Y9 231 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 LINC00052Q96N35 136 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 PRR25Q96S07 402 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 AAMDCQ9H7C9 122 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 OTORQ9NRC9 128 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 CLEC5AQ9NY25 188 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 ARL2-SNX15V9GYD0 113 aa6.28□□□□□ -1.4
SF3B3-212ENST00000568539 PGPA6NDG6 321 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 FAM74A7A6NL05 159 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 OR11H12B2RN74 326 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 H3BS24 57 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 M0R3E3 92 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 PAGE4O60829 102 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 PPT1P50897 306 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 ZNF124Q15973 351 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 APRG1Q8IVJ8 170 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 ZNF738Q8NE65 137 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 MRPL53Q96EL3 112 aaKnown RBP6.27□□□□□ -1.41
SF3B3-212ENST00000568539 WFDC10AQ9H1F0 79 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 MANBALQ9NQG1 85 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 GNG13Q9P2W3 67 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 PRELID1Q9Y255 219 aa6.27□□□□□ -1.41
SF3B3-212ENST00000568539 ZNF705FA8MVS1 300 aaPredicted RBP6.26□□□□□ -1.41
SF3B3-212ENST00000568539 F6UB75 175 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 DEFB1P60022 68 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 RAB14P61106 215 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 CLLU1Q5K131 121 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 CCDC28AQ8IWP9 274 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 ARL6IP6Q8N6S5 226 aa6.26□□□□□ -1.41
SF3B3-212ENST00000568539 RPUSD4Q96CM3 377 aaKnown RBP6.26□□□□□ -1.41
SF3B3-212ENST00000568539 NKX6-2Q9C056 277 aaPredicted RBP6.26□□□□□ -1.41
SF3B3-212ENST00000568539 A0A0J9YX75 114 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 KNCNA6PVL3 124 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 PRAC2D3DTV9 90 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 IFNA1P01562 189 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 SLC25A5P05141 298 aaKnown RBP6.25□□□□□ -1.41
SF3B3-212ENST00000568539 PRB4P10163 310 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-212ENST00000568539 BCL2P10415 239 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 TAGLN2P37802 199 aaKnown RBP6.25□□□□□ -1.41
SF3B3-212ENST00000568539 CSN1S1P47710 185 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 ATP5G3P48201 142 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 DEFA6Q01524 100 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 HAGHQ16775 308 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 GDF5OSQ5U4N7 250 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 CST9LP1Q5W188 147 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 FOXI2Q6ZQN5 318 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 DEFB125Q8N687 156 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 C5orf17Q8NAS9 161 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 OR8A1Q8NGG7 326 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 CMTM2Q8TAZ6 248 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 RXFP4Q8TDU9 374 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 SAV1Q9H4B6 383 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-212ENST00000568539 AURKAIP1Q9NWT8 199 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-212ENST00000568539 EPDR1Q9UM22 224 aa6.25□□□□□ -1.41
SF3B3-212ENST00000568539 BIRC6Q9NR09 4857 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 IGKV2-40A0A087WW87 121 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 LOC102723971A0A1B0GUV8 181 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 RBFOX3A6NFN3 312 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 DIRC3C9JPN6 131 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 C11orf94C9JXX5 98 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 NPIPB6E9PJ23 425 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 H3BMM0 161 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 IGKV2D-40P01614 121 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 PRB2P02812 416 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 TCRAP04437 139 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 ZNF705DP0CH99 300 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 ZNF705BP0CI00 300 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 IGHV4-30-4P0DP06 118 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 HLA-DRB4P13762 266 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 GNG5P63218 68 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 MEF2BQ02080 365 aaPredicted RBP6.24□□□□□ -1.41
SF3B3-212ENST00000568539 ACTL10Q5JWF8 245 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 EBLN2Q6P2I7 272 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 RARRES2Q99969 163 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 TXNDC17Q9BRA2 123 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 TCEAL7Q9BRU2 100 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 AP5S1Q9NUS5 200 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 VAX2Q9UIW0 290 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 HLA-DRB4X5D2U9 266 aa6.24□□□□□ -1.41
SF3B3-212ENST00000568539 WNK1Q9H4A3 2382 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms