RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CDKN1BP46527 198 aa13.38□□□□□ -0.27
CLN3-227ENST00000567495 FAM222AQ5U5X8 452 aa13.38□□□□□ -0.27
CLN3-227ENST00000567495 BAP18Q8IXM2 172 aa13.38□□□□□ -0.27
CLN3-227ENST00000567495 MRPL53Q96EL3 112 aaKnown RBP13.38□□□□□ -0.27
CLN3-227ENST00000567495 FAM210BQ96KR6 192 aa13.38□□□□□ -0.27
CLN3-227ENST00000567495 ZNF586Q9NXT0 402 aa13.38□□□□□ -0.27
CLN3-227ENST00000567495 YTHDF2Q9Y5A9 579 aaKnown RBP13.38□□□□□ -0.27
CLN3-227ENST00000567495 IGHV4-4A0A075B6R2 117 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 H3BTX0 84 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 ZNF767PQ75MW2 155 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 C20orf144Q9BQM9 153 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 PRELID1Q9Y255 219 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 HSPB11Q9Y547 144 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 TIMM9Q9Y5J7 89 aa13.37□□□□□ -0.27
CLN3-227ENST00000567495 IFNA5P01569 189 aa13.36□□□□□ -0.27
CLN3-227ENST00000567495 RPL12P30050 165 aaKnown RBP13.36□□□□□ -0.27
CLN3-227ENST00000567495 TAS2R60P59551 318 aa13.36□□□□□ -0.27
CLN3-227ENST00000567495 GCSAMLQ5JQS6 135 aa13.36□□□□□ -0.27
CLN3-227ENST00000567495 RPP25LQ8N5L8 163 aaKnown RBP13.36□□□□□ -0.27
CLN3-227ENST00000567495 ODF3Q96PU9 254 aa13.36□□□□□ -0.27
CLN3-227ENST00000567495 LINC01587Q99440 93 aa13.36□□□□□ -0.27
CLN3-227ENST00000567495 MRPL32Q9BYC8 188 aaKnown RBP13.36□□□□□ -0.27
CLN3-227ENST00000567495 TRAV12-2A0A075B6T6 113 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 LYRM9A8MSI8 78 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 ZNF705GA8MUZ8 300 aaPredicted RBP13.35□□□□□ -0.27
CLN3-227ENST00000567495 SCGB1C1Q8TD33 95 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 NDUFAF3Q9BU61 184 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 MBD2Q9UBB5 411 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 ALG5Q9Y673 324 aa13.35□□□□□ -0.27
CLN3-227ENST00000567495 SLC25A2Q9BXI2 301 aa13.34□□□□□ -0.27
CLN3-227ENST00000567495 AAMDCQ9H7C9 122 aa13.34□□□□□ -0.27
CLN3-227ENST00000567495 PRAC2D3DTV9 90 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 NPIPB6E9PJ23 425 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 H7BYZ3 331 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 LEPP41159 167 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 DAD1P61803 113 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 ZNF493Q6ZR52 646 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 FAM167A-AS1Q96KT0 104 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 PARD6GQ9BYG4 376 aaPredicted RBP13.33□□□□□ -0.28
CLN3-227ENST00000567495 OR51M1Q9H341 326 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 FUT9Q9Y231 359 aa13.33□□□□□ -0.28
CLN3-227ENST00000567495 NDUFB4O95168 129 aa13.32□□□□□ -0.28
CLN3-227ENST00000567495 NBEAP1P0C6P0 100 aa13.32□□□□□ -0.28
CLN3-227ENST00000567495 PYYP10082 97 aa13.32□□□□□ -0.28
CLN3-227ENST00000567495 MIR17HGQ75NE6 70 aa13.32□□□□□ -0.28
CLN3-227ENST00000567495 MED28Q9H204 178 aa13.32□□□□□ -0.28
CLN3-227ENST00000567495 HYDINQ4G0P3 5121 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 BLNKQ8WV28 456 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 ASB13Q8WXK3 278 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 C16orf74Q96GX8 76 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 LINC00477Q96M19 166 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 PAXXQ9BUH6 204 aa13.31□□□□□ -0.28
CLN3-227ENST00000567495 P0DMU3 169 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 FAM231AP0DMU4 169 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 FAM231CP0DMU5 169 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 CT45A10P0DMU9 189 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 TAS2R45P59539 299 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 FFAR4Q5NUL3 377 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 CCDC28AQ8IWP9 274 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 SMIM3Q9BZL3 60 aa13.3□□□□□ -0.28
CLN3-227ENST00000567495 M0R3E3 92 aa13.29□□□□□ -0.28
CLN3-227ENST00000567495 PRB4P10163 310 aaPredicted RBP13.29□□□□□ -0.28
CLN3-227ENST00000567495 GFI1BQ5VTD9 330 aa13.29□□□□□ -0.28
CLN3-227ENST00000567495 TMEM263Q8WUH6 116 aaKnown RBP13.29□□□□□ -0.28
CLN3-227ENST00000567495 RNF141Q8WVD5 230 aa13.29□□□□□ -0.28
CLN3-227ENST00000567495 PLA2G2EQ9NZK7 142 aa13.29□□□□□ -0.28
CLN3-227ENST00000567495 TIMM8BQ9Y5J9 83 aaPredicted RBP13.29□□□□□ -0.28
CLN3-227ENST00000567495 PLAC8L1A1L4L8 177 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 OR7C2O60412 319 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 PRM2P04554 102 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 SLC25A5P05141 298 aaKnown RBP13.28□□□□□ -0.28
CLN3-227ENST00000567495 NMBP08949 121 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 HTN1P15515 57 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 AZU1P20160 251 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 ICAM4Q14773 271 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 LYPD1Q8N2G4 141 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 EXOC3-AS1Q8N2X6 119 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 RNASE8Q8TDE3 154 aaKnown RBP13.28□□□□□ -0.28
CLN3-227ENST00000567495 FXYD5Q96DB9 178 aa13.28□□□□□ -0.28
CLN3-227ENST00000567495 DEFB130BP0DP73 79 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 DEFB130AP0DP74 79 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 HTN3P15516 51 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 ZNF266Q14584 549 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 FCN2Q15485 313 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 KHDC3LQ587J8 217 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 C9orf47Q6ZRZ4 202 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 PYGO2Q9BRQ0 406 aa13.27□□□□□ -0.29
CLN3-227ENST00000567495 OR10J4P0C629 311 aa13.26□□□□□ -0.29
CLN3-227ENST00000567495 CSN1S1P47710 185 aa13.26□□□□□ -0.29
CLN3-227ENST00000567495 KIR3DS1Q14943 382 aa13.26□□□□□ -0.29
CLN3-227ENST00000567495 ACOT6Q3I5F7 207 aaPredicted RBP13.26□□□□□ -0.29
CLN3-227ENST00000567495 AGPAT4-IT1Q9H0P7 198 aa13.26□□□□□ -0.29
CLN3-227ENST00000567495 WFDC1Q9HC57 220 aa13.26□□□□□ -0.29
CLN3-227ENST00000567495 CBY3A6NI87 242 aa13.25□□□□□ -0.29
CLN3-227ENST00000567495 GIPP09681 153 aaPredicted RBP13.25□□□□□ -0.29
CLN3-227ENST00000567495 M6PRP20645 277 aa13.25□□□□□ -0.29
CLN3-227ENST00000567495 UBE2L3P68036 154 aaKnown RBP13.25□□□□□ -0.29
CLN3-227ENST00000567495 ERCC8Q13216 396 aa13.25□□□□□ -0.29
CLN3-227ENST00000567495 TMEM78Q5T7P6 136 aa13.25□□□□□ -0.29
CLN3-227ENST00000567495 POM121L12Q8N7R1 296 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms