RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CNFNQ9BYD5 112 aa4.84□□□□□ -1.63
CLN3-223ENST00000566472 NAV3Q8IVL0 2385 aa4.84□□□□□ -1.64
CLN3-223ENST00000566472 PKDREJQ9NTG1 2253 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 IGHV4-61A0A0C4DH41 118 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 A6NDX4 124 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 FABP5P3A8MUU1 101 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 SYS1-DBNDD2H3BUS1 97 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 RPLP1P05386 114 aaKnown RBP4.83□□□□□ -1.64
CLN3-223ENST00000566472 CLEC3BP05452 202 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 GATA3P23771 443 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 HNRNPA3P51991 378 aaKnown RBP4.83□□□□□ -1.64
CLN3-223ENST00000566472 TDRG1Q3Y452 100 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 FAM104BQ5XKR9 115 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 LYZL1Q6UWQ5 148 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 CLEC19AQ6UXS0 136 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 Q71RC1 249 aaPredicted RBP4.83□□□□□ -1.64
CLN3-223ENST00000566472 FA2HQ7L5A8 372 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 FER1L6-AS1Q8NA97 138 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 OR10AG1Q8NH19 301 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 USMG5Q96IX5 58 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 MAP1LC3CQ9BXW4 147 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 NPFFR1Q9GZQ6 430 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 TMEM191AQ9H0A3 160 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 ST20Q9HBF5 79 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 LAMTOR2Q9Y2Q5 125 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 MRPS16Q9Y3D3 137 aaKnown RBP4.83□□□□□ -1.64
CLN3-223ENST00000566472 LENEPQ9Y5L5 61 aa4.83□□□□□ -1.64
CLN3-223ENST00000566472 ANKHD1Q8IWZ3 2542 aaKnown RBP4.83□□□□□ -1.64
CLN3-223ENST00000566472 ANKRD11Q6UB99 2663 aaPredicted RBP4.82□□□□□ -1.64
CLN3-223ENST00000566472 TRAV40A0A0B4J280 105 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 G3V318 75 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 NDUFA4O00483 81 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 IGHG2P01859 326 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 PPBPP02775 128 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 MSMBP08118 114 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 ZNF138P52744 262 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 C9orf47Q6ZRZ4 202 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 SPATA12Q7Z6I5 190 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 ORMDL3Q8N138 153 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 PIFOQ8TCI5 191 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 GLMPQ8WWB7 406 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 VGLL1Q99990 258 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 MS4A6AQ9H2W1 248 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 AP5S1Q9NUS5 200 aa4.82□□□□□ -1.64
CLN3-223ENST00000566472 TRAV8-2A0A0B4J237 113 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 TRBV7-9A0A0J9YWB2 115 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 LINC01546A6NGU7 62 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 OR4C46A6NHA9 309 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 TCAPO15273 167 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 TRGV3P03979 118 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 SLC25A16P16260 332 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 HLA-DMBP28068 263 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 PPIFP30405 207 aaKnown RBP4.81□□□□□ -1.64
CLN3-223ENST00000566472 ARL3P36405 182 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 ZNF80P51504 273 aaPredicted RBP4.81□□□□□ -1.64
CLN3-223ENST00000566472 ATP5J2P56134 94 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 COL5A1-AS1Q5SY13 56 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 TMEM78Q5T7P6 136 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 LINC01545Q5VT33 79 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 SAMD13Q5VXD3 122 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 Q6ZN92 141 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 C8orf86Q6ZUL3 223 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 PRSS3P2Q8NHM4 247 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 Q8TAT8 98 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 PRELID3AQ96N28 172 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 PSMG3-AS1Q96PY0 264 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 TPPP3Q9BW30 176 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 PTPRZ1P23471 2315 aaPredicted RBP4.81□□□□□ -1.64
CLN3-223ENST00000566472 WDFY4Q6ZS81 3184 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 AKAP13Q12802 2813 aa4.81□□□□□ -1.64
CLN3-223ENST00000566472 A0A0G2JLM5 398 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 TMEM213A2RRL7 107 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 TMEM89A2RUT3 159 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 LINC01548A6NM66 108 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 B4DSR2 109 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 HSBP1L1C9JCN9 74 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 D6R8Y8 96 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 J3QLI3 93 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 M0QZ24 198 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 OVOL1O14753 267 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 TSPOP30536 169 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 CACNG7P62955 275 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 MRPL51Q4U2R6 128 aaKnown RBP4.8□□□□□ -1.64
CLN3-223ENST00000566472 PSMG4Q5JS54 123 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 TMEM219Q86XT9 240 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 DPF1Q92782 380 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 LINC00477Q96M19 166 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 PMCHL2Q9BQD1 86 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 ZNF747Q9BV97 191 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 AGPAT4-IT1Q9H0P7 198 aa4.8□□□□□ -1.64
CLN3-223ENST00000566472 ROS1P08922 2347 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 RP1L1Q8IWN7 2480 aaPredicted RBP4.79□□□□□ -1.64
CLN3-223ENST00000566472 IGHV4-4A0A075B6R2 117 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 IGHV4-30-2A0A087WSY4 118 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 TMSB15BA0A087X1C1 80 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 IGHV3-35A0A0C4DH35 117 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 PRAC2D3DTV9 90 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 H3BUX3 64 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 SNAI2O43623 268 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 HBDP02042 147 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms