RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CHAC2Q8WUX2 184 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 RPL29P47914 159 aaKnown RBP10.47□□□□□ -0.73
CLN3-222ENST00000566083 SULT1A1P50225 295 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 CLINT1Q14677 625 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 ATP6V1FQ16864 119 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 ZNF503Q96F45 646 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 NOP10Q9NPE3 64 aaKnown RBP10.47□□□□□ -0.73
CLN3-222ENST00000566083 NUDT15Q9NV35 164 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 WDR83OSQ9Y284 106 aa10.47□□□□□ -0.73
CLN3-222ENST00000566083 RYR1P21817 5038 aa10.46□□□□□ -0.73
CLN3-222ENST00000566083 CCSO14618 274 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 CST7O76096 145 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 FCN2Q15485 313 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 VWC2Q2TAL6 325 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 LINC00299Q6ZSB3 139 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 MRPL53Q96EL3 112 aaKnown RBP10.46□□□□□ -0.74
CLN3-222ENST00000566083 SAT2Q96F10 170 aaPredicted RBP10.46□□□□□ -0.74
CLN3-222ENST00000566083 PYGO2Q9BRQ0 406 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 CCDC32Q9BV29 185 aa10.46□□□□□ -0.74
CLN3-222ENST00000566083 LYRM2Q9NU23 88 aaPredicted RBP10.46□□□□□ -0.74
CLN3-222ENST00000566083 TRAV6A0A075B6T7 132 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 NBDYA0A0U1RRE5 68 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 SNURFLB1AK76 121 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 MPDU1O75352 247 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 RLN2P04090 185 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 MIC13Q5XKP0 118 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 ZNRF2Q8NHG8 242 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 SLC39A9Q9NUM3 307 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 PRELID1Q9Y255 219 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 FAT2Q9NYQ8 4349 aa10.45□□□□□ -0.74
CLN3-222ENST00000566083 FAM24AA6NFZ4 105 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 NPIPB6E9PJ23 425 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 H3BNG1 76 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 H3BQ15 152 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 SLC17A3O00476 420 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 M6PRP20645 277 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 BAXQ07812 192 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 PDE6HQ13956 83 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 GFI1BQ5VTD9 330 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 LINC00612Q8N6U2 182 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 GNPNAT1Q96EK6 184 aaPredicted RBP10.44□□□□□ -0.74
CLN3-222ENST00000566083 TMEM14CQ9P0S9 112 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 DNAH17Q9UFH2 4485 aa10.44□□□□□ -0.74
CLN3-222ENST00000566083 FAM240BA0A1B0GVZ2 78 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 SLC25A5P05141 298 aaKnown RBP10.43□□□□□ -0.74
CLN3-222ENST00000566083 H2AFB2P0C5Z0 115 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 S100A10P60903 97 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 OR5I1Q13606 314 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 MORN5Q5VZ52 161 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 MZT2BQ6NZ67 158 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 C6orf223Q8N319 242 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 TMEM252Q8N6L7 170 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 RNF141Q8WVD5 230 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 SEC22CQ9BRL7 303 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 C11orf1Q9H5F2 150 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 DNAH2Q9P225 4427 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 PKHD1P08F94 4074 aa10.43□□□□□ -0.74
CLN3-222ENST00000566083 PRAC2D3DTV9 90 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 SNRPCP09234 159 aaKnown RBP10.42□□□□□ -0.74
CLN3-222ENST00000566083 HIST1H1EP10412 219 aaKnown RBP10.42□□□□□ -0.74
CLN3-222ENST00000566083 DAZ2Q13117 558 aaKnown RBP10.42□□□□□ -0.74
CLN3-222ENST00000566083 TTC32Q5I0X7 151 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 ZNF680Q8NEM1 530 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 RXFP4Q8TDU9 374 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 LINC00477Q96M19 166 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 AAMDCQ9H7C9 122 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 ZNF586Q9NXT0 402 aa10.42□□□□□ -0.74
CLN3-222ENST00000566083 TRBV19A0A075B6N1 114 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 UBE2L5PA0A1B0GUS4 154 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 H3BTX0 84 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 CT45A10P0DMU9 189 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 IL15RAQ13261 267 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 SSX7Q7RTT5 188 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 LINC00588Q9Y4M8 146 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 TIMM9Q9Y5J7 89 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 TRAV26-1A0A087WT03 109 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 TRAV5A0A0B4J249 113 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 TRAV12-3A0A0B4J271 114 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 NMBP08949 121 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 BTF3P20290 206 aaKnown RBP10.41□□□□□ -0.74
CLN3-222ENST00000566083 FGF7P21781 194 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 RAB32Q13637 225 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 KIR3DS1Q14943 382 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 S100ZQ8WXG8 99 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 LINC00467Q9BRT7 94 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 Q9H8V8 135 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 GPN1Q9HCN4 374 aaPredicted RBP10.41□□□□□ -0.74
CLN3-222ENST00000566083 KCNIP2Q9NS61 270 aa10.41□□□□□ -0.74
CLN3-222ENST00000566083 IGSF23A1L1A6 192 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 GAGE12BA1L429 117 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 C7orf71A4D174 169 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 GAGE7O76087 117 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 GAGE12FP0CL80 117 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 GAGE12GP0CL81 117 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 GAGE12IP0CL82 117 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 C18orf15Q96N68 181 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 PARD6GQ9BYG4 376 aaPredicted RBP10.4□□□□□ -0.75
CLN3-222ENST00000566083 SLC25A31Q9H0C2 315 aa10.4□□□□□ -0.75
CLN3-222ENST00000566083 A0A1W2PPQ1 181 aa10.39□□□□□ -0.75
CLN3-222ENST00000566083 J3KRW8 73 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms