RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 WFDC3Q8IUB2 231 aa23.03■■□□□ 1.28
CTCF-203ENST00000566078 LINC00482Q8N8I6 264 aa23.03■■□□□ 1.28
CTCF-203ENST00000566078 LINC00479Q96M42 142 aa23.03■■□□□ 1.28
CTCF-203ENST00000566078 PRELID1Q9Y255 219 aa23.03■■□□□ 1.28
CTCF-203ENST00000566078 DIRC3C9JPN6 131 aa23.02■■□□□ 1.28
CTCF-203ENST00000566078 TFPI2P48307 235 aa23.02■■□□□ 1.28
CTCF-203ENST00000566078 DCANP1Q8TF63 244 aa23.02■■□□□ 1.28
CTCF-203ENST00000566078 ZNF747Q9BV97 191 aa23.02■■□□□ 1.28
CTCF-203ENST00000566078 SIGLEC8Q9NYZ4 499 aa23.02■■□□□ 1.28
CTCF-203ENST00000566078 ZNF705FA8MVS1 300 aaPredicted RBP23.01■■□□□ 1.27
CTCF-203ENST00000566078 DNASE2O00115 360 aaPredicted RBP23.01■■□□□ 1.27
CTCF-203ENST00000566078 CLEC5AQ9NY25 188 aa23.01■■□□□ 1.27
CTCF-203ENST00000566078 TRAV34A0A0B4J273 112 aa23■■□□□ 1.27
CTCF-203ENST00000566078 ISLRO14498 428 aa23■■□□□ 1.27
CTCF-203ENST00000566078 DEFB114Q30KQ6 69 aa23■■□□□ 1.27
CTCF-203ENST00000566078 SAMD13Q5VXD3 122 aa23■■□□□ 1.27
CTCF-203ENST00000566078 C20orf173Q96LM9 149 aa23■■□□□ 1.27
CTCF-203ENST00000566078 LCN12Q6JVE5 192 aa23■■□□□ 1.27
CTCF-203ENST00000566078 RBPMS2Q6ZRY4 209 aaKnown RBP23■■□□□ 1.27
CTCF-203ENST00000566078 TMEM61Q8N0U2 210 aa23■■□□□ 1.27
CTCF-203ENST00000566078 NAT8Q9UHE5 227 aa23■■□□□ 1.27
CTCF-203ENST00000566078 SAP30O75446 220 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 UBE2G1P62253 170 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 PSG3Q16557 428 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 C12orf54Q6X4T0 127 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 SVBPQ8N300 66 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 ARL6IP6Q8N6S5 226 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 C3orf56Q8N813 242 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 MRPL53Q96EL3 112 aaKnown RBP22.99■■□□□ 1.27
CTCF-203ENST00000566078 SGK494Q96LW2 274 aa22.99■■□□□ 1.27
CTCF-203ENST00000566078 TRBV20OR9-2A0A075B6H5 130 aa22.98■■□□□ 1.27
CTCF-203ENST00000566078 PAFAH1B2P68402 229 aa22.98■■□□□ 1.27
CTCF-203ENST00000566078 CD300EQ496F6 205 aaPredicted RBP22.98■■□□□ 1.27
CTCF-203ENST00000566078 K7EQM0 130 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 ID1P41134 155 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 TMEM183BQ1AE95 376 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 TMEM241Q24JQ0 296 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 CENPWQ5EE01 88 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 TVP23CQ96ET8 276 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 FMC1Q96HJ9 113 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 IGKV2-40A0A087WW87 121 aaPredicted RBP22.97■■□□□ 1.27
CTCF-203ENST00000566078 K7EQG2 157 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 IGKV2D-40P01614 121 aaPredicted RBP22.97■■□□□ 1.27
CTCF-203ENST00000566078 ZNF738Q8NE65 137 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 KLF12Q9Y4X4 402 aa22.97■■□□□ 1.27
CTCF-203ENST00000566078 TRAV8-1A0A0A6YYK1 113 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 SERTM2A0A1B0GWG4 89 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 PGPEP1LA6NFU8 196 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 C9JCJ5 164 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 PRAC2D3DTV9 90 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 TSPAN4O14817 238 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 GNG4P50150 75 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 TAS2R60P59551 318 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 TMEM75Q8N9X5 138 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 IGF2BP2-AS1Q96M15 143 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 SDF2L1Q9HCN8 221 aa22.96■■□□□ 1.27
CTCF-203ENST00000566078 VWFP04275 2813 aa22.95■■□□□ 1.26
CTCF-203ENST00000566078 FAM24BQ8N5W8 94 aa22.95■■□□□ 1.26
CTCF-203ENST00000566078 M0R036 132 aa22.94■■□□□ 1.26
CTCF-203ENST00000566078 S100A9P06702 114 aaKnown RBP22.94■■□□□ 1.26
CTCF-203ENST00000566078 SNAPINO95295 136 aa22.93■■□□□ 1.26
CTCF-203ENST00000566078 ZNF688P0C7X2 276 aa22.93■■□□□ 1.26
CTCF-203ENST00000566078 ADIRFQ15847 76 aa22.93■■□□□ 1.26
CTCF-203ENST00000566078 Q86TA4 180 aa22.93■■□□□ 1.26
CTCF-203ENST00000566078 CLRN3Q8NCR9 226 aa22.93■■□□□ 1.26
CTCF-203ENST00000566078 TRAV25A0A0B4J276 109 aa22.92■■□□□ 1.26
CTCF-203ENST00000566078 IGLV2-11P01706 119 aa22.92■■□□□ 1.26
CTCF-203ENST00000566078 RPL23P62829 140 aaKnown RBP22.92■■□□□ 1.26
CTCF-203ENST00000566078 PNRC1Q12796 327 aaPredicted RBP22.92■■□□□ 1.26
CTCF-203ENST00000566078 AURKAIP1Q9NWT8 199 aaPredicted RBP22.92■■□□□ 1.26
CTCF-203ENST00000566078 TRAV2A0A0B4J234 112 aa22.91■■□□□ 1.26
CTCF-203ENST00000566078 IZUMO1RA6ND01 250 aa22.91■■□□□ 1.26
CTCF-203ENST00000566078 SNRPD3P62318 126 aaKnown RBP22.91■■□□□ 1.26
CTCF-203ENST00000566078 SHISA2Q6UWI4 295 aa22.91■■□□□ 1.26
CTCF-203ENST00000566078 PRNTQ86SH4 94 aa22.91■■□□□ 1.26
CTCF-203ENST00000566078 STAB1Q9NY15 2570 aa22.91■■□□□ 1.26
CTCF-203ENST00000566078 FLI1Q01543 452 aaPredicted RBP22.9■■□□□ 1.26
CTCF-203ENST00000566078 LINC01551Q86U37 167 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 VGLL1Q99990 258 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 PSG8Q9UQ74 426 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 RBAKDNA6NC62 111 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 PSMG4Q5JS54 123 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 BAGE2Q86Y30 109 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 NHLRC2Q8NBF2 726 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 OCC1Q8TAD7 63 aa22.9■■□□□ 1.26
CTCF-203ENST00000566078 SPAG8Q99932 426 aaPredicted RBP22.9■■□□□ 1.26
CTCF-203ENST00000566078 TRBV6-1A0A0K0K1D8 114 aa22.89■■□□□ 1.25
CTCF-203ENST00000566078 IGLV1-51P01701 117 aa22.89■■□□□ 1.25
CTCF-203ENST00000566078 ATRAIDQ6UW56 229 aa22.89■■□□□ 1.25
CTCF-203ENST00000566078 SPATA3Q8NHX4 192 aa22.89■■□□□ 1.25
CTCF-203ENST00000566078 LY96Q9Y6Y9 160 aa22.89■■□□□ 1.25
CTCF-203ENST00000566078 LTAP01374 205 aa22.88■■□□□ 1.25
CTCF-203ENST00000566078 DEFB1P60022 68 aa22.88■■□□□ 1.25
CTCF-203ENST00000566078 ERCC8Q13216 396 aa22.88■■□□□ 1.25
CTCF-203ENST00000566078 IGLV2-8P01709 118 aa22.87■■□□□ 1.25
CTCF-203ENST00000566078 ASCL2Q99929 193 aa22.87■■□□□ 1.25
CTCF-203ENST00000566078 SORL1Q92673 2214 aa22.87■■□□□ 1.25
CTCF-203ENST00000566078 OR4C46A6NHA9 309 aa22.86■■□□□ 1.25
CTCF-203ENST00000566078 COL6A5A8TX70 2615 aa22.86■■□□□ 1.25
CTCF-203ENST00000566078 K7EN84 100 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms