RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 FGF7P21781 194 aa15.88■□□□□ 0.13
CLN3-215ENST00000565236 FCN2Q15485 313 aa15.88■□□□□ 0.13
CLN3-215ENST00000565236 RNF212Q495C1 297 aa15.88■□□□□ 0.13
CLN3-215ENST00000565236 C16orf74Q96GX8 76 aa15.88■□□□□ 0.13
CLN3-215ENST00000565236 PLAC8L1A1L4L8 177 aa15.87■□□□□ 0.13
CLN3-215ENST00000565236 C15orf53Q8NAA6 179 aa15.87■□□□□ 0.13
CLN3-215ENST00000565236 CHAC2Q8WUX2 184 aa15.87■□□□□ 0.13
CLN3-215ENST00000565236 H7BYZ3 331 aa15.86■□□□□ 0.13
CLN3-215ENST00000565236 RLN2P04090 185 aa15.86■□□□□ 0.13
CLN3-215ENST00000565236 LGALS9BQ3B8N2 356 aa15.86■□□□□ 0.13
CLN3-215ENST00000565236 ZNF493Q6ZR52 646 aa15.86■□□□□ 0.13
CLN3-215ENST00000565236 C20orf144Q9BQM9 153 aa15.86■□□□□ 0.13
CLN3-215ENST00000565236 TIMM8BQ9Y5J9 83 aaPredicted RBP15.86■□□□□ 0.13
CLN3-215ENST00000565236 DNAH2Q9P225 4427 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 CBY3A6NI87 242 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 F5H768 121 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 MPDU1O75352 247 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 UPK1BO75841 260 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 KIR3DS1Q14943 382 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 PARD6GQ9BYG4 376 aaPredicted RBP15.85■□□□□ 0.13
CLN3-215ENST00000565236 ZNF586Q9NXT0 402 aa15.85■□□□□ 0.13
CLN3-215ENST00000565236 IGLV2-18A0A075B6J9 118 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 SIX6O95475 246 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 ATP5G1P05496 136 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 ATP5G3P48201 142 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 NHLH2Q02577 135 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 TMEM263Q8WUH6 116 aaKnown RBP15.84■□□□□ 0.13
CLN3-215ENST00000565236 DNAH17Q9UFH2 4485 aa15.84■□□□□ 0.13
CLN3-215ENST00000565236 ZNF253O75346 499 aa15.83■□□□□ 0.12
CLN3-215ENST00000565236 GFI1BQ5VTD9 330 aa15.83■□□□□ 0.12
CLN3-215ENST00000565236 CCDC28AQ8IWP9 274 aa15.83■□□□□ 0.12
CLN3-215ENST00000565236 SLC25A31Q9H0C2 315 aa15.83■□□□□ 0.12
CLN3-215ENST00000565236 NOP10Q9NPE3 64 aaKnown RBP15.83■□□□□ 0.12
CLN3-215ENST00000565236 TMEM14CQ9P0S9 112 aa15.83■□□□□ 0.12
CLN3-215ENST00000565236 TRBV19A0A075B6N1 114 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 E5RGE8 158 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 J3KRW8 73 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 CT45A10P0DMU9 189 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 LEPP41159 167 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 OR5C1Q8NGR4 320 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 RNASE8Q8TDE3 154 aaKnown RBP15.82■□□□□ 0.12
CLN3-215ENST00000565236 ATG101Q9BSB4 218 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 NPCDR1Q9BY65 106 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 NMES1Q9C002 83 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 TIMM9Q9Y5J7 89 aa15.82■□□□□ 0.12
CLN3-215ENST00000565236 NPIPB6E9PJ23 425 aa15.81■□□□□ 0.12
CLN3-215ENST00000565236 PRAF2O60831 178 aa15.81■□□□□ 0.12
CLN3-215ENST00000565236 HIST1H1EP10412 219 aaKnown RBP15.81■□□□□ 0.12
CLN3-215ENST00000565236 CYCSP99999 105 aaKnown RBP15.81■□□□□ 0.12
CLN3-215ENST00000565236 LRRC37A5PQ49AS3 106 aa15.81■□□□□ 0.12
CLN3-215ENST00000565236 ODF3Q96PU9 254 aa15.81■□□□□ 0.12
CLN3-215ENST00000565236 FAT2Q9NYQ8 4349 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 A6NHS1 94 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 PRSS29PA6NIE9 313 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 INMT-MINDY4F8WBC2 141 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 RTL8CO15255 209 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 THAP6Q8TBB0 222 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 MRPL53Q96EL3 112 aaKnown RBP15.8■□□□□ 0.12
CLN3-215ENST00000565236 PRELID1Q9Y255 219 aa15.8■□□□□ 0.12
CLN3-215ENST00000565236 TRAV12-3A0A0B4J271 114 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 NUDT3O95989 172 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 PYYP10082 97 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 FAM3BP58499 235 aaPredicted RBP15.79■□□□□ 0.12
CLN3-215ENST00000565236 IFITM3Q01628 133 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 GCSAMLQ5JQS6 135 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 Q6ZR54 194 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 BLNKQ8WV28 456 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 OR5AC2Q9NZP5 309 aa15.79■□□□□ 0.12
CLN3-215ENST00000565236 HERC2O95714 4834 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 M0R3E3 92 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 NDUFB4O95168 129 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 PDE6HQ13956 83 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 CLINT1Q14677 625 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 PTTG2Q9NZH5 202 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 NACAE9PAV3 2078 aa15.78■□□□□ 0.12
CLN3-215ENST00000565236 SNURFLB1AK76 121 aa15.77■□□□□ 0.12
CLN3-215ENST00000565236 H0YIZ8 118 aa15.77■□□□□ 0.12
CLN3-215ENST00000565236 AAMDCQ9H7C9 122 aa15.77■□□□□ 0.12
CLN3-215ENST00000565236 ERCC8Q13216 396 aa15.76■□□□□ 0.11
CLN3-215ENST00000565236 SOHLH1Q5JUK2 328 aa15.76■□□□□ 0.11
CLN3-215ENST00000565236 LINC00477Q96M19 166 aa15.76■□□□□ 0.11
CLN3-215ENST00000565236 PYGO2Q9BRQ0 406 aa15.76■□□□□ 0.11
CLN3-215ENST00000565236 SLC25A2Q9BXI2 301 aa15.76■□□□□ 0.11
CLN3-215ENST00000565236 A0A1B0GVY2 172 aa15.75■□□□□ 0.11
CLN3-215ENST00000565236 SLC25A5P05141 298 aaKnown RBP15.75■□□□□ 0.11
CLN3-215ENST00000565236 MIR17HGQ75NE6 70 aa15.75■□□□□ 0.11
CLN3-215ENST00000565236 EXOC3-AS1Q8N2X6 119 aa15.75■□□□□ 0.11
CLN3-215ENST00000565236 MARVELD1Q9BSK0 173 aa15.75■□□□□ 0.11
CLN3-215ENST00000565236 KCNIP2Q9NS61 270 aa15.75■□□□□ 0.11
CLN3-215ENST00000565236 GAGE12BA1L429 117 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 GAGE7O76087 117 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 NBEAP1P0C6P0 100 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 GAGE12FP0CL80 117 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 GAGE12GP0CL81 117 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 GAGE12IP0CL82 117 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 CCL18P55774 89 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 OR5I1Q13606 314 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 ICAM4Q14773 271 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 FAM167A-AS1Q96KT0 104 aa15.74■□□□□ 0.11
CLN3-215ENST00000565236 WDR61Q9GZS3 305 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms