RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CSN1S1P47710 185 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 FOXI2Q6ZQN5 318 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 CMTM2Q8TAZ6 248 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 RPUSD4Q96CM3 377 aaKnown RBP15.32■□□□□ 0.04
CLN3-212ENST00000564574 TXNDC17Q9BRA2 123 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 GNG13Q9P2W3 67 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 YTHDF2Q9Y5A9 579 aaKnown RBP15.32■□□□□ 0.04
CLN3-212ENST00000564574 DNAH3Q8TD57 4116 aa15.32■□□□□ 0.04
CLN3-212ENST00000564574 RGS13O14921 159 aa15.31■□□□□ 0.04
CLN3-212ENST00000564574 PAGE4O60829 102 aa15.31■□□□□ 0.04
CLN3-212ENST00000564574 SUMO1P63165 101 aaKnown RBP15.31■□□□□ 0.04
CLN3-212ENST00000564574 EBLN2Q6P2I7 272 aa15.31■□□□□ 0.04
CLN3-212ENST00000564574 C5orf17Q8NAS9 161 aa15.31■□□□□ 0.04
CLN3-212ENST00000564574 TCEAL7Q9BRU2 100 aa15.31■□□□□ 0.04
CLN3-212ENST00000564574 SAV1Q9H4B6 383 aaPredicted RBP15.31■□□□□ 0.04
CLN3-212ENST00000564574 GGTLC3B5MD39 225 aa15.3■□□□□ 0.04
CLN3-212ENST00000564574 M0R3E3 92 aa15.3■□□□□ 0.04
CLN3-212ENST00000564574 SLC25A5P05141 298 aaKnown RBP15.3■□□□□ 0.04
CLN3-212ENST00000564574 CLLU1Q5K131 121 aa15.3■□□□□ 0.04
CLN3-212ENST00000564574 APRG1Q8IVJ8 170 aa15.3■□□□□ 0.04
CLN3-212ENST00000564574 AURKAIP1Q9NWT8 199 aaPredicted RBP15.3■□□□□ 0.04
CLN3-212ENST00000564574 ZNF705FA8MVS1 300 aaPredicted RBP15.29■□□□□ 0.04
CLN3-212ENST00000564574 CST9LP1Q5W188 147 aa15.29■□□□□ 0.04
CLN3-212ENST00000564574 DEFB125Q8N687 156 aa15.29■□□□□ 0.04
CLN3-212ENST00000564574 PCNPQ8WW12 178 aaKnown RBP15.29■□□□□ 0.04
CLN3-212ENST00000564574 A0A0J9YX75 114 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 SERTM2A0A1B0GWG4 89 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 DUSP14O95147 198 aaKnown RBP15.28■□□□□ 0.04
CLN3-212ENST00000564574 BCL2P10415 239 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 HLA-DRB4P13762 266 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 CCDC28AQ8IWP9 274 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 OR8A1Q8NGG7 326 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 WFDC10AQ9H1F0 79 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 HLA-DRB4X5D2U9 266 aa15.28■□□□□ 0.04
CLN3-212ENST00000564574 RBAKDNA6NC62 111 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 DIRC3C9JPN6 131 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 C11orf94C9JXX5 98 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 ZNF124Q15973 351 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 OR10J6PQ8NGY7 276 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 SRD5A3Q9H8P0 318 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 EPDR1Q9UM22 224 aa15.27■□□□□ 0.04
CLN3-212ENST00000564574 LOC102723971A0A1B0GUV8 181 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 KNCNA6PVL3 124 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 A8MZ25 164 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 PRAC2D3DTV9 90 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 F6UZH7 168 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 ATP5G3P48201 142 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 HAGHQ16775 308 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 ACTL10Q5JWF8 245 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 STHQ8IWL8 128 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 HIST1H2BAQ96A08 127 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 CLUHP3Q96NS8 147 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 CITED4Q96RK1 184 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 VAX2Q9UIW0 290 aa15.26■□□□□ 0.03
CLN3-212ENST00000564574 RBFOX3A6NFN3 312 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 F6UB75 175 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 H3BMM0 161 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 TCRAP04437 139 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 DEFB1P60022 68 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 MEF2BQ02080 365 aaPredicted RBP15.25■□□□□ 0.03
CLN3-212ENST00000564574 GDF5OSQ5U4N7 250 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 FAM210AQ96ND0 272 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 ATG101Q9BSB4 218 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 RPH3ALQ9UNE2 315 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 MEGF8Q7Z7M0 2845 aa15.25■□□□□ 0.03
CLN3-212ENST00000564574 AGRNO00468 2067 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 A8MTW9 85 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 NPIPB6E9PJ23 425 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 K7EQM0 130 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 IGHV4-30-4P0DP06 118 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 GNG5P63218 68 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 HIST1H1AQ02539 215 aaPredicted RBP15.24■□□□□ 0.03
CLN3-212ENST00000564574 ZNF506Q5JVG8 444 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 TRPT1Q86TN4 253 aaKnown RBP15.24■□□□□ 0.03
CLN3-212ENST00000564574 CYB561D1Q8N8Q1 229 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 TUBA4BQ9H853 241 aa15.24■□□□□ 0.03
CLN3-212ENST00000564574 PEX7O00628 323 aa15.23■□□□□ 0.03
CLN3-212ENST00000564574 NDUFS6O75380 124 aaKnown RBP15.23■□□□□ 0.03
CLN3-212ENST00000564574 CNN1P51911 297 aaKnown RBP15.23■□□□□ 0.03
CLN3-212ENST00000564574 C9orf47Q6ZRZ4 202 aa15.23■□□□□ 0.03
CLN3-212ENST00000564574 GOLT1AQ6ZVE7 132 aa15.23■□□□□ 0.03
CLN3-212ENST00000564574 LINC00477Q96M19 166 aa15.23■□□□□ 0.03
CLN3-212ENST00000564574 IGKV2-40A0A087WW87 121 aaPredicted RBP15.22■□□□□ 0.03
CLN3-212ENST00000564574 FBLL1A6NHQ2 334 aaKnown RBP15.22■□□□□ 0.03
CLN3-212ENST00000564574 K7EIL1 84 aa15.22■□□□□ 0.03
CLN3-212ENST00000564574 PDE6DO43924 150 aa15.22■□□□□ 0.03
CLN3-212ENST00000564574 IGKV2D-40P01614 121 aaPredicted RBP15.22■□□□□ 0.03
CLN3-212ENST00000564574 PRB2P02812 416 aaPredicted RBP15.22■□□□□ 0.03
CLN3-212ENST00000564574 TOR2AQ5JU69 321 aa15.22■□□□□ 0.03
CLN3-212ENST00000564574 OR4B1Q8NGF8 309 aa15.22■□□□□ 0.03
CLN3-212ENST00000564574 ZNF705DP0CH99 300 aaPredicted RBP15.21■□□□□ 0.03
CLN3-212ENST00000564574 ZNF705BP0CI00 300 aaPredicted RBP15.21■□□□□ 0.03
CLN3-212ENST00000564574 TMEM78Q5T7P6 136 aa15.21■□□□□ 0.03
CLN3-212ENST00000564574 EIF5A2Q9GZV4 153 aaKnown RBP15.21■□□□□ 0.03
CLN3-212ENST00000564574 NOTCH1P46531 2555 aa15.21■□□□□ 0.02
CLN3-212ENST00000564574 LOC102724200A0A096LPH7 203 aaPredicted RBP15.2■□□□□ 0.02
CLN3-212ENST00000564574 MORN3Q6PF18 240 aaPredicted RBP15.2■□□□□ 0.02
CLN3-212ENST00000564574 TMEM75Q8N9X5 138 aa15.2■□□□□ 0.02
CLN3-212ENST00000564574 C11orf52Q96A22 123 aa15.2■□□□□ 0.02
CLN3-212ENST00000564574 ODF3Q96PU9 254 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms